Job Description P55135 Confidence 97.95% Date Thu Jan 5 12:06:06 GMT 2012 Rank 282 Aligned Residues 154 % Identity 14% Template c3adnB_ PDB info PDB header:transferase Chain: B: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from e. coli. Resolution 2.90 Å

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		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.			.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.						.	.	.	330	.	.	.	.	.
Predicted Secondary structure																																															.	.																				.	.	.	.	.
Query SS confidence																																															.	.																				.	.	.	.	.
Query Sequence		F	I	Q	V	N	A	G	V	N	Q	K	M	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	.	.	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	.	.	.	.	.	N	A	R	L	N	G	L	Q	N
Query Conservation																																															.	.																				.	.	.	.	.
Alig confidence																										.																					.	.																				.	.	.	.	.
Template Conservation																										.
Template Sequence		T	T	E	R	D	E	F	I	Y	H	E	M	M	T	H	V	P	L	L	A	H	G	H	A	.	K	H	V	L	I	I	G	G	G	D	G	A	M	L	R	E	V	T	R	H	K	N	V	E	S	I	T	M	V	E	I	D	A	G	V	V	S	F	C	R	Q	Y	L	P	N	H	N	A	G	S	Y	D	D	P	R
Template Known Secondary structure				T	T	T																S	S			.							S			S	S							T	T		T	T									S												S					T	T		T	T		T	T
Template Predicted Secondary structure																										.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.						390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.											.	.	.	.	.
Query SS confidence																																														.											.	.	.	.	.
Query Sequence		V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	M	Q	Q	I	I	K	L	.	E	P	I	R	I	V	Y	V	S	C	.	.	.	.	.	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A
Query Conservation																																														.											.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.																.	.	.	.										.											.	.	.	.	.																.
Template Conservation									.	.	.	.	.	.	.	.	.																.	.	.	.																																									.
Template Sequence		F	K	L	V	I	V	N	.	.	.	.	.	.	.	.	.	Q	T	S	Q	T	F	D	V	I	I	S	D	C	T	S	.	.	.	.	A	F	Y	E	G	C	K	R	C	L	N	P	G	G	I	F	V	A	Q	N	G	V	C	F	L	Q	Q	E	E	A	I	D	S	H	R	K	L	S	H	Y	.	F	S	D	V
Template Known Secondary structure									.	.	.	.	.	.	.	.	.		T	T												T	.	.	.	.	T								T															S	S														T	T	.		S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.																.	.	.	.																																									.
Template SS confidence
		134	.	.	.	.	.	140										.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.
		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	A	M	L	D	M	F	P	H	T	G	H	L	E	S	M	V	L	F	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	Y	Q	A	A	I	P	T	Y	Y	G	G	I	M	T	F	A	W	A	T	D
Template Known Secondary structure									T	T	S	S	S	S									S
Template Predicted Secondary structure
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions