Job Description P55135 Confidence 99.61% Date Thu Jan 5 12:06:06 GMT 2012 Rank 46 Aligned Residues 196 % Identity 18% Template c2yvlB_ PDB info PDB header:transferase Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of trna (m1a58) methyltransferase trmi from aquifex2 aeolicus Resolution 2.20 Å

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		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.																.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	Y	L	A	P	D	S	E	I	L	E	T	V	S	G	E	M	P	W	Y	D	S	N	G	L	R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	M	V	A	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	L	R	K	L	L	P	K	Q	S	L	S	V	K	K	S	V	L	K	F	D	E	V	I	G	K	P	E	G	V	K	I	N	G	F	E	V	Y	R	P	T	L	E	E	I	I	L	L	G	F	E	R	K	T	Q	I	I	Y	P	K	D	S	F	Y	I	A	L	K	L	N	L	N	K	E	K	R	V	L	E	F
Template Known Secondary structure								T	T						T	T					G	G	G	T	T	T			T	T				T	T																S			S	S															T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.		.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	.	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V
Query Conservation																																										.
Alig confidence																																										.											.	.	.	.																					.	.
Template Conservation																																																					.	.	.	.																					.	.
Template Sequence		G	T	G	S	G	A	L	L	A	V	L	S	E	V	A	G	E	V	W	T	F	E	A	V	E	E	F	Y	K	T	A	Q	K	N	L	K	K	F	N	L	G	K	N	V	K	F	F	N	V	D	F	.	.	.	.	K	D	A	E	V	P	E	G	I	F	H	A	A	F	V	D	V	R	E	P	.	.	W	H	Y
Template Known Secondary structure				T	T	S										S	S							S	S														T	T			T	T						S		T	.	.	.	.	T	T	S				T	T		B	S						S	S		G	.	.	G	G	G
Template Predicted Secondary structure																																																					.	.	.	.																					.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.
		373	.	.	.	.	.	.		380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.																.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure									.			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	Q	Q	I	I	K	L	.	E	P	.	I	R	I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L	A	M	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	M	F	P	H	T	G	H	L	E	S	M	V	L	F	S	R	V	K
Query Conservation									.			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.
Template Conservation																																																																						.	.	.
Template Sequence		L	E	K	V	H	K	S	L	M	E	G	A	P	V	G	F	L	L	P	T	A	N	Q	V	I	K	L	L	E	S	I	E	N	Y	F	G	N	L	E	V	V	E	I	L	H	R	H	Y	K	T	I	S	E	R	F	R	P	E	D	Q	M	V	A	H	T	A	Y	L	.	.	.	V	F	G	R	K	L	K
Template Known Secondary structure									B		T	T								S	S												T	T	T														B				G	G	G			B		S						S				.	.	.
Template Predicted Secondary structure																																																																						.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240				.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions