Job Description P55135 Confidence 96.01% Date Thu Jan 5 12:06:06 GMT 2012 Rank 318 Aligned Residues 149 % Identity 15% Template c2qy6A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0209 protein yfck; PDBTitle: crystal structure of the n-terminal domain of upf0209 protein yfck2 from escherichia coli o157:h7 Resolution 2.00 Å

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		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.															310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure																					.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	I	Q	V	N	A	G	V	N	Q	K	M	V	A	R	A	L	E	W	.	.	.	.	.	.	.	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	V	G	V	E	G	V	P	A	L	V
Query Conservation																					.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	F	S	N	D	N	G	L	E	E	T	R	Y	V	F	L	G	G	N	Q	L	E	A	R	F	P	E	H	P	H	P	L	F	V	V	A	E	S	G	F	G	T	G	L	N	F	L	T	L	W	Q	A	F	D	Q	F	R	E	A	H	P	Q	A	Q	L	Q	R	L	H	F	I	S	F	E	K	F	P	L	T	R
Template Known Secondary structure		S	S		T	T	T													T	T					G	G	G		S	S	S							S			T	T	S																		T	T	S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		322	.	.	.	.													.	.	.	330	.	.	.	.															.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.							.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.	.
Query Sequence		E	K	G	Q	Q	.	.	.	.	.	.	.	.	.	.	.	.	N	A	R	L	N	G	L	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	.	N	G	F	D	K	V	L	L	D	P	.	.	.	.	.	.	A	R	A	G
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.											.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	L	A	L	A	H	Q	H	W	P	E	L	A	P	W	A	E	Q	L	Q	A	Q	W	P	M	P	L	P	G	C	H	R	L	L	L	D	R	V	T	L	D	L	W	F	G	D	I	N	E	L	I	S	Q	L	D	D	S	L	N	Q	K	V	D	A	W	F	L	D	G	F	A	P	A	K	N	P	D	M	W
Template Known Secondary structure									T	T		G	G	G										T				S		S																	S						G	G	G	S		G	G	G	T	T									S	S		T	T	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
		369	370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure													.
Query SS confidence													.
Query Sequence		A	A	G	V	M	Q	Q	I	I	K	L	.	E	P	I	R	I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L	A	M	L
Query Conservation													.
Alig confidence													.																							.	.	.
Template Conservation																																				.	.	.
Template Sequence		T	Q	N	L	F	N	A	M	A	R	L	A	R	P	G	G	T	L	A	T	F	T	S	A	G	F	V	R	R	G	L	Q	E	A	.	.	.	G	F	T	M	Q	K	R	K	G	F
Template Known Secondary structure																						S														.	.	.	T									S
Template Predicted Secondary structure																																				.	.	.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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