Job Description P55135 Confidence 98.42% Date Thu Jan 5 12:06:06 GMT 2012 Rank 252 Aligned Residues 121 % Identity 16% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.			310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.					.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																															.	.																									.	.	.	.
Query SS confidence																															.	.																									.	.	.	.
Query Sequence		W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	A	.	.	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	.	.	.	.	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K
Query Conservation																															.	.																									.	.	.	.
Alig confidence																															.	.																									.	.	.	.																			.	.
Template Conservation																																																																															.	.
Template Sequence		L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D	P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	.	.	E
Template Known Secondary structure			T	T	S	S	S								S		S	S	S							T	T		T	T																						T	T	T	G	G	G	T	T		T	T						S								S	S		.	.	S
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.			.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.								370	.	.	.	.	.	.	.	.	.		380	.	.	.	.	.	.	.	.	.						390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.											.											.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.											.											.	.	.	.	.
Query Sequence		N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	.	.	.	.	.	.	.	A	G	V	M	Q	Q	I	I	K	L	.	E	P	I	R	I	V	Y	V	S	C	.	.	.	.	.	N	P	A	T	L	A	R	D	S	E	A	L	L	K
Query Conservation																	.	.	.	.	.	.	.											.											.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.											.											.	.	.	.	.
Template Conservation
Template Sequence		G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	L	R	P	G	G	V	V	C	T	Q	A	E	S	L	W	L	H	X	D	I	I	E	D	I	V	S	N	C	R	E
Template Known Secondary structure		S												S	S	S	G	G	G	G	G	G	S																								T	T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions