Job Description P55135 Confidence 96.76% Date Thu Jan 5 12:06:06 GMT 2012 Rank 310 Aligned Residues 125 % Identity 21% Template c2g1pB_ PDB info PDB header:transferase/dna Chain: B: PDB Molecule:dna adenine methylase; PDBTitle: structure of e. coli dna adenine methyltransferase (dam) Resolution 1.89 Å

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		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	M	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.														.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.														.	.
Template Sequence		P	L	L	D	D	I	K	R	H	L	P	.	.	K	G	E	C	L	V	E	P	F	V	G	A	G	.	.	S	V	F	L	N	T	D	F	S	R	Y	I	L	A	D	I	N	S	D	L	I	S	L	Y	N	I	V	K	M	R	T	D	E	Y	V	Q	A	A	R	E	L	F	V	P	E	T	N	C	A	E	V	Y
Template Known Secondary structure		G	G										.	.			S					T	T		T	T		.	.					T				S							S																								T	T	S	S	G	G	G		S
Template Predicted Secondary structure													.	.														.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.			40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
																																																												328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	Q	F	R	E	E	F	N	K	S	Q	D	P	F	R	R	A	V	L	F	L	Y	L	N	R	Y	G	Y	N	G	L	C	R	Y	N	L	R	G	E	F	N	V	P	F	G	R	Y	K	K	P	Y	F	P	E	A	E	L	Y	H	F	A	E	K	A	Q	N	A	F	F	Y	C	E	S	Y	A	D	S	M	A	R
Template Known Secondary structure																												B	G	G	G				B		T	T	S		B				B				S	S															G	G	G													T	T
Template Predicted Secondary structure
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370												.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.		.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.		.
Query Sequence		Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	.	.	.	.	.	.	.	.	.	.	.	G	.	V	M	Q	Q	I	I	K	L	E	P	I	R	I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.		.
Alig confidence						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.		.															.	.													.	.	.	.
Template Conservation						.	.	.	.																																									.	.													.	.	.	.
Template Sequence		A	D	D	S	.	.	.	.	S	V	V	Y	C	D	P	P	Y	A	P	L	T	N	S	F	T	L	E	Q	Q	A	H	L	A	E	I	A	E	G	L	V	E	R	H	I	P	V	L	I	.	.	S	N	H	D	T	M	L	T	R	E	W	Y	.	.	.	.	Q	R	A	K	L	H	V	V
Template Known Secondary structure				T	T	.	.	.	.								S							S																			T	T						.	.												T	.	.	.	.	T	T	S
Template Predicted Secondary structure						.	.	.	.																																									.	.													.	.	.	.
Template SS confidence
		172	.	.	.					.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions