Job Description P55135 Confidence 99.33% Date Thu Jan 5 12:06:06 GMT 2012 Rank 93 Aligned Residues 154 % Identity 24% Template c2frxD_ PDB info PDB header:transferase Chain: D: PDB Molecule:hypothetical protein yebu; PDBTitle: crystal structure of yebu, a m5c rna methyltransferase from e.coli Resolution 2.90 Å

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		276	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.				.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Predicted Secondary structure									.	.																											.	.	.
Query SS confidence									.	.																											.	.	.
Query Sequence		A	R	A	L	E	W	L	.	.	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	.	.	.	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q	N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q
Query Conservation									.	.																											.	.	.
Alig confidence									.	.																											.	.	.
Template Conservation
Template Sequence		X	L	P	V	A	A	L	F	A	D	G	N	A	P	Q	R	V	X	D	V	A	A	A	P	G	S	K	T	T	Q	I	S	A	R	X	N	N	E	G	A	I	L	A	N	E	F	S	A	S	R	V	K	V	L	H	A	N	I	S	R	C	G	I	S	N	V	A	L	T	H	F	D	G	R	V	F	G	A	A	V
Template Known Secondary structure										T	T	T				S					S	S		T	T	S										T	T	T		S							S	S															T			S								S	T	T					S
Template Predicted Secondary structure
Template SS confidence
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.																										.	.	.	.	.	.	.		380	.		.	.	.	.	.	.	.	.							390	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.			.									.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.			.									.	.	.	.	.	.
Query Sequence		P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	Q	Q	I	I	K	L	.	E	P	.	I	R	I	V	Y	V	S	C	.	.	.	.	.	.	N	P	A	T	L	A	R	D
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.			.									.	.	.	.	.	.
Alig confidence		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.			.									.	.	.	.	.	.
Template Conservation		.	.	.
Template Sequence		.	.	.	P	E	X	F	D	A	I	L	L	D	A	P	C	S	G	E	G	V	V	R	K	D	P	D	A	L	K	N	W	S	P	E	S	N	Q	E	I	A	A	T	Q	R	E	L	I	D	S	A	F	H	A	L	R	P	G	G	T	L	V	Y	S	T	C	T	L	N	Q	E	E	N	E	A	V	C	L	W	L
Template Known Secondary structure		.	.	.	T	T														G	G	G	G	G	T		T	T	S	S	S	S																							T												S			S	S	T	T	T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.															.	.	.	.	.	.	.	.	420	.	.	.	.	.			.	.	.	.	430	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Query Sequence		S	E	A	L	L	K	A	G	Y	T	I	A	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	M	L	D	M	F	P	H	T	G	H	L	E	S	.	.	M	V	L	F	S	R	V	K
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Alig confidence									.							.	.	.	.	.	.	.	.	.	.	.	.	.	.															.	.
Template Conservation									.
Template Sequence		K	E	T	Y	P	D	A	.	V	E	F	L	P	L	G	D	L	F	P	G	A	N	K	A	L	T	E	E	G	F	L	H	V	F	P	Q	I	Y	D	C	E	G	F	F	V	A	R	L	R	K	T	Q
Template Known Secondary structure					S	T	T	T	.							T	T	S	S	T	T	G	G	G	G	B		T	T	S						T	T	T	T	T	S												S
Template Predicted Secondary structure									.
Template SS confidence
		262	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions