Job Description P55135 Confidence 100.00% Date Thu Jan 5 12:06:06 GMT 2012 Rank 1 Aligned Residues 417 % Identity 97% Template c1uwvA_ PDB info PDB header:transferase Chain: A: PDB Molecule:23s rrna (uracil-5-)-methyltransferase ruma; PDBTitle: crystal structure of ruma, the iron-sulfur cluster2 containing e. coli 23s ribosomal rna 5-methyluridine3 methyltransferase Resolution 1.95 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	I	T	V	S	V	N	D	L	D	S	F	G	Q	G	V	A	R	H	N	G	K	T	L	F	I	P	G	L	L	P	Q	E	N	A	E	V	T	V	T	E	D	K	K	Q	Y	A	R	A	K	V	V	R	R	L	S	D	S	P	E	R	E	T	P	R	C	P	H	F	G	V	C	G	G	C	Q	Q	Q	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	I	T	V	S	V	N	D	L	D	S	F	G	Q	G	V	A	R	H	N	G	K	T	L	F	I	P	G	L	L	P	Q	E	N	A	E	V	T	V	T	E	D	K	K	Q	Y	A	R	A	K	V	V	R	R	L	S	D	S	P	E	R	E	T	P	R	C	P	H	F	G	V	C	G	G	C	Q	Q	Q	H
Template Known Secondary structure													T	T	S							T	T							T			T	T												S	S														T	T	B				S		T	T	T	T	T	B	T	T		S		T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	V	D	L	Q	Q	R	S	K	S	A	A	L	A	R	L	M	K	H	D	V	S	E	V	I	A	D	V	P	W	G	Y	R	R	R	A	R	L	S	L	N	Y	L	P	K	T	Q	Q	L	Q	M	G	F	R	K	A	G	S	S	D	I	V	D	V	K	Q	C	P	I	L	A	P	Q	L	E	A	L	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	V	D	L	Q	Q	R	S	K	S	A	A	L	A	R	L	X	K	H	D	V	S	E	V	I	A	D	V	P	W	G	Y	R	R	R	A	R	L	S	L	N	Y	L	P	K	T	Q	Q	L	Q	X	G	F	R	K	A	G	S	S	D	I	V	D	V	K	Q	C	P	I	L	A	P	Q	L	E	A	L	L	P
Template Known Secondary structure		B																		T	S										S	S	S		B	S										T	T	T	T								B	T	T	S	S						S			T	T	B
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	R	A	C	L	G	S	L	Q	A	M	R	H	L	G	H	V	E	L	V	Q	A	T	S	G	T	L	M	I	L	R	H	T	A	P	L	S	S	A	D	R	E	K	L	E	R	F	S	H	S	E	G	L	D	L	Y	L	A	P	D	S	E	I	L	E	T	V	S	G	E	M	P	W	Y	D	S	N	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	R	A	C	L	G	S	L	Q	A	X	R	H	L	G	H	V	E	L	V	Q	A	T	S	G	T	L	X	I	L	R	H	T	A	P	L	S	S	A	D	R	E	K	L	E	R	F	S	H	S	E	G	L	D	L	Y	L	A	P	D	S	E	I	L	E	T	V	S	G	E	X	P	W	Y	D	S	N	G	L
Template Known Secondary structure								T	T		G	G	G	G	G										T	T									S	S																		T							S	S	S	S															T	T
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	M	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	M	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	T	F	S	P	R	D	F	I	Q	V	N	A	G	V	N	Q	K	X	V	A	R	A	L	E	W	L	D	V	Q	P	E	D	R	V	L	D	L	F	C	G	X	G	N	F	T	L	P	L	A	T	Q	A	A	S	V	V	G	V	E	G	V	P	A	L	V	E	K	G	Q	Q	N	A	R	L	N	G	L	Q
Template Known Secondary structure							S	S	S				S	B																T			T	T							S		T	T	T	T	T						T	T	S	S							S															T	T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	M	Q	Q	I	I	K	L	E	P	I	R	I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L	A	M	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	T	F	Y	H	E	N	L	E	E	D	V	T	K	Q	P	W	A	K	N	G	F	D	K	V	L	L	D	P	A	R	A	G	A	A	G	V	X	Q	Q	I	I	K	L	E	P	I	R	I	V	Y	V	S	C	N	P	A	T	L	A	R	D	S	E	A	L	L	K	A	G	Y	T	I	A	R	L	A	X	L
Template Known Secondary structure		S								T	T	S			S	S	S	G	G	G	T	T			S								T	T															S							S															T	T
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	M	F	P	H	T	G	H	L	E	S	M	V	L	F	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	X	F	P	H	T	G	H	L	E	S	X	V	L	F	S	R
Template Known Secondary structure				S	T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		415	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.