Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	L	I	A	I	I	L	M	V	L	T	G	V	C	F	A	D	V	G	D	Y	R	L	N	G	E	D	N	A	R	I	E	S	V	V	T	D	N	C	E	K	T	A	V	L	V	G	G	D	R	L	A	R	V	E	I	E	Y
Secondary structure
SS confidence
Disorder		?	?	?																								?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	T	L	C	K	P	V	A	L	V	I	I	Y	D	R	F	D	D	I	A	A	I	P	L	K	V	T	L	K	K	V	L	K	E	N	S	D	E	K	I	N	L	L	N	K	M	G	D	L	A	G	R	I	V	A	E	Q	Y	L
Secondary structure
SS confidence
Disorder																																						?				?
Disorder confidence
		.	.	.	.	.
Sequence		G	M	S	F	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1kjn chain A Region: 33 - 96 Aligned: 63 Modelled: 62 Confidence: 7.2% Identity: 30% Fold: Hypothetical protein MTH777 (MT0777) Superfamily: Hypothetical protein MTH777 (MT0777) Family: Hypothetical protein MTH777 (MT0777) Phyre2 PDB 2o8s chain A domain 1 Region: 86 - 119 Aligned: 34 Modelled: 34 Confidence: 6.5% Identity: 29% Fold: AGR C 984p-like Superfamily: AGR C 984p-like Family: AGR C 984p-like Phyre2 PDB 2ab0 chain A domain 1 Region: 67 - 87 Aligned: 21 Modelled: 21 Confidence: 6.2% Identity: 19% Fold: Flavodoxin-like Superfamily: Class I glutamine amidotransferase-like Family: DJ-1/PfpI Phyre2 PDB 2r5o chain A Region: 27 - 76 Aligned: 50 Modelled: 50 Confidence: 6.0% Identity: 14% PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt Phyre2 PDB 2izv chain A domain 1 Region: 76 - 96 Aligned: 21 Modelled: 21 Confidence: 5.0% Identity: 38% Fold: SOCS box-like Superfamily: SOCS box-like Family: SOCS box-like Phyre2 1 d1kjna_ 2 d2o8sa1 3 d2ab0a1 4 c2r5oA_ 5 d2izva1

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1kjna_ 7.2 30 Fold:Hypothetical protein MTH777 (MT0777) Superfamily:Hypothetical protein MTH777 (MT0777) Family:Hypothetical protein MTH777 (MT0777) 2 d2o8sa1 6.5 29 Fold:AGR C 984p-like Superfamily:AGR C 984p-like Family:AGR C 984p-like 3 d2ab0a1 6.2 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 4 c2r5oA_ 6.0 14 PDB header:transport protein Chain: A: PDB Molecule:putative atp binding component of abc- PDBTitle: crystal structure of the c-terminal domain of wzt 5 d2izva1 5.0 38 Fold:SOCS box-like Superfamily:SOCS box-like Family:SOCS box-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0