Job Description P0A9Q7 Confidence 56.87% Date Thu Jan 5 11:11:00 GMT 2012 Rank 261 Aligned Residues 182 % Identity 8% Template c3sajB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate receptor 1; PDBTitle: crystal structure of glutamate receptor glua1 amino terminal domain Resolution 2.50 Å

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		347	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.				.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
Predicted Secondary structure																					.	.	.
Query SS confidence																					.	.	.
Query Sequence		K	D	F	E	D	A	V	E	K	A	E	K	L	V	A	M	G	G	I	.	.	.	G	H	T	S	C	L	Y	T	D	Q	D	N	Q	P	A	R	V	S	Y	F	G	Q	K	M	K	T	A	R	I	L	I	N	T	P	A	S	Q	G	G	I	G	D	L	Y	N	F	K	L	A	P	S	L	T	L	G	C	G	S
Query Conservation																					.	.	.
Alig confidence																					.	.	.
Template Conservation
Template Sequence		S	Q	E	H	A	A	F	R	F	A	L	S	Q	L	T	E	P	P	K	L	L	P	Q	I	D	I	V	N	I	S	D	S	F	E	M	T	Y	R	F	C	S	Q	F	S	K	G	V	Y	A	I	F	G	F	Y	E	R	R	T	V	N	M	L	T	S	F	C	G	A	L	H	V	C	F	I	T	P	S	F	P	V
Template Known Secondary structure														T			S	S	S											T	T																T		S								T	T	T												T							S
Template Predicted Secondary structure
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	G	N	S	I	S	E	N	V	G	P	K	H	L	I	N	K	K	T	V	A	K	R	A	E	N	M	L	W	H	K	L	P	K	S	I	Y	F	R	R	G	S	L	P	I	A	L	D	E	V	I	T	D	G	H	K	R	A	L	I	V	T	D	R	F	L	F	N	N	G	Y	A	D	Q	I	T	S	V	L
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template Sequence		D	T	S	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	L	Q	L	R	P	E	L	Q	E	A	L	I	S	I	I	D	H	Y	K	W	Q	T	F	V	Y	I	Y	D	A	D	.	R	G	L	S	V	L	Q	R	V	L	D	T	A
Template Known Secondary structure		S	S			T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T					S															T												.			T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.
Template SS confidence
		98	.	100	.	.																														.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	A	G	V	E	T	E	V	F	F	E	V	E	A	D	P	T	L	S	I	V	R	K	G	A	E	L	A	N	S	F	K	P	D	V	I	I	A	L	G	G	G	S	P	M	D	A	A	K	I	M	W	V	M	Y	E	H	P
Query Conservation
Alig confidence															.	.																										.	.
Template Conservation															.	.																										.	.
Template Sequence		A	E	K	N	W	Q	V	T	A	V	N	I	L	.	.	T	T	T	E	E	G	Y	R	M	L	F	Q	D	L	E	K	K	K	E	R	L	V	V	V	D	.	.	C	E	S	E	R	L	N	A	I	L	G	Q	I	V	K	L	E
Template Known Secondary structure					T								T	T	.	.	T																S	S	S							.	.																T	T
Template Predicted Secondary structure															.	.																										.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.			.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions