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Job DescriptionP0A9Q7
Confidence93.92%DateThu Jan 5 11:11:00 GMT 2012
Rank89Aligned Residues198
% Identity11%Templatec3q41B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd)
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  FEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNS
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Template Sequence  FREAVNQANKRHGSWKIQLNATSVTHKPNAIQMALSVCEDLISSQVYAILVSHPPTPN. . . DHFTPTPVSYTAGFYRIPV
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   429430.........440.........450.........460.........470.........480.........490.........500........
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Query Sequence  ISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
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Template Sequence  LGLTTRMSIYSDKSI. . . . . . HLSFLRTVPPYSHQ. . . SSVWFEMMRVYNWNHIILLVSDDHEGRAAQKRLETLLEERES
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   119120.........130... ......140....... ..150.........160.........170.........180.........
 
   509510.........520.........530.........540.........550.........560..
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Query Sequence  ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHP
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Template Sequence  KAEKVLQFDPGT. . KNVTALLMEARELEARVIILSA. . SEDDAATVYRAAAMLN
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   190.........200. ........210.........220... ......230.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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