Job Description P0A9Q7 Confidence 54.57% Date Thu Jan 5 11:11:00 GMT 2012 Rank 275 Aligned Residues 187 % Identity 10% Template c3n0xA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:possible substrate binding protein of abc transporter PDBTitle: crystal structure of an abc-type branched-chain amino acid transporter2 (rpa4397) from rhodopseudomonas palustris cga009 at 1.50 a resolution Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.						.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.		.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.												.	.	.	.	.																											.
Query SS confidence																			.	.	.												.	.	.	.	.																											.
Query Sequence		D	F	E	D	A	V	E	K	A	E	K	L	V	A	M	G	G	.	.	.	I	G	H	T	S	C	L	Y	T	D	Q	.	.	.	.	.	D	N	Q	P	A	R	V	S	Y	F	G	Q	K	M	K	T	A	R	I	L	I	N	T	P	A	S	.	Q	G	G	I	G	D	L	Y	N	F	K	L	A	P	S	L	T
Query Conservation																			.	.	.												.	.	.	.	.																											.
Alig confidence																			.	.	.												.	.	.	.	.																											.
Template Conservation
Template Sequence		Q	T	E	T	G	L	X	X	G	L	E	Y	A	T	K	G	T	X	T	L	D	G	R	K	I	V	V	I	T	K	D	D	Q	S	K	P	D	L	S	K	A	A	L	A	E	A	Y	Q	D	D	G	A	D	I	A	I	G	T	S	S	S	A	A	A	L	A	D	L	P	V	A	E	E	N	K	K	I	L	I	V
Template Known Secondary structure															T	T	T					T	T											T	T															T	S			S						S	S															T
Template Predicted Secondary structure
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	C	G	S	W	G	G	N	S	I	S	E	N	V	G	P	K	H	L	I	N	K	K	T	V	A	K	R	A	E	N	M	L	W	H	K	L	P	K	S	I	Y	F	R	R	G	S	L	P	I	A	L	D	E	V	I	T	D	G	H	K	R	A	L	I	V	T	D	R	F	L	F	N	N	G	Y	A	D	Q
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		E	P	A	V	A	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	G	E	K	W	N	R	Y	I	F	R	T	G	R	.	.	.	.	N	S	S	Q	D	A	I	S	N	A	V	A	I	G	K	Q	G	V	T	I	A	T	L	A	Q	D	Y	A	F	G	R	D	G	V	A	A
Template Known Secondary structure			S				G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	T	T	T			T	T					S		.	.	.	.																T	T									S	S
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		117	.	.	120	.	.	.																			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		499	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.			.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		I	T	S	V	L	K	A	A	G	V	E	T	E	V	F	F	E	V	E	A	D	P	T	.	.	L	S	I	V	R	K	G	A	E	L	A	N	S	F	K	P	D	V	I	I	A	L	G	G	G	S	P	M	D	A	A	K	I	M	W
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		F	K	E	A	L	A	K	T	G	A	T	L	A	T	E	E	Y	V	P	T	T	T	T	D	F	T	A	V	G	Q	R	L	F	D	A	L	K	D	K	P	G	K	K	I	I	W	V	I	W	A	G	G	G	D	P	L	T	K	L	Q
Template Known Secondary structure							T	T	T	T											T	T																T	T		S	S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions