Job Description P0A9Q7 Confidence 91.67% Date Thu Jan 5 11:11:00 GMT 2012 Rank 100 Aligned Residues 179 % Identity 15% Template c3ip5A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter, substrate binding protein (amino acid); PDBTitle: structure of atu2422-gaba receptor in complex with alanine Resolution 1.35 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.						.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Predicted Secondary structure																			.	.													.	.	.	.	.
Query SS confidence																			.	.													.	.	.	.	.
Query Sequence		D	F	E	D	A	V	E	K	A	E	K	L	V	A	M	G	G	.	.	I	G	H	T	S	C	L	Y	T	D	Q	D	.	.	.	.	.	N	Q	P	A	R	V	S	Y	F	G	Q	K	M	K	T	A	R	I	L	I	N	T	P	A	S	Q	G	G	I	G	D	L	Y	N	F	K	L	A	P	S	L	T	L	G
Query Conservation																			.	.													.	.	.	.	.
Alig confidence																			.	.													.	.	.	.	.
Template Conservation
Template Sequence		Q	I	Q	K	G	A	E	Q	A	A	K	D	I	N	A	A	G	G	I	N	G	E	Q	I	K	I	V	L	G	D	D	V	S	D	P	K	Q	G	I	S	V	A	N	K	F	V	A	D	G	V	K	F	V	V	G	H	F	N	S	G	V	S	I	P	A	S	E	V	Y	A	E	N	G	I	L	E	I	T	P	A
Template Known Secondary structure																	T	T		B	T	T	B										T	T															T	T								S	S														T	T						S	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		421	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500
Predicted Secondary structure
Query SS confidence
Query Sequence		C	G	S	W	G	G	N	S	I	S	E	N	V	G	P	K	H	L	I	N	K	K	T	V	A	K	R	A	E	N	M	L	W	H	K	L	P	K	S	I	Y	F	R	R	G	S	L	P	I	A	L	D	E	V	I	T	D	G	H	K	R	A	L	I	V	T	D	R	F	L	F	N	N	G	Y	A	D	Q	I	T
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template Sequence		A	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	V	F	T	E	R	G	L	W	N	T	F	R	T	C	G	R	D	D	Q	Q	G	G	I	A	G	K	Y	.	.	.	L	A	D	H	F	K	D	A	K	V	A	I	I	H	D	K	T	P	Y	G	Q	G	L	A	D	E	T	K
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	S	S			T	T				S	S														.	.	.						T	T									S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.
Template SS confidence
		101	.	.																			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.				.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		501	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	L	K	A	A	G	V	E	T	E	V	F	F	E	V	E	A	D	P	T	L	S	I	V	R	K	G	A	E	L	A	N	S	F	K	P	D	V	I	I	A	L	G	G	G	S	P	M
Query Conservation
Alig confidence																								.	.
Template Conservation																								.	.
Template Sequence		K	A	A	N	A	A	G	V	T	E	V	M	Y	E	G	V	N	V	G	D	K	D	.	.	F	S	A	L	I	S	K	M	K	E	A	G	V	S	I	I	Y	W	G	G	L	H	T	E	A
Template Known Secondary structure							T	T				S							T	T				.	.											T	T								S
Template Predicted Secondary structure																								.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions