Job Description P0A9Q7 Confidence 86.83% Date Thu Jan 5 11:11:00 GMT 2012 Rank 128 Aligned Residues 185 % Identity 12% Template c3h6hB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:glutamate receptor, ionotropic kainate 2; PDBTitle: crystal structure of the glur6 amino terminal domain dimer assembly2 mpd form Resolution 2.90 Å

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		349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.				.	.	.	.	370	.	.	.	.	.	.	.							.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.													.	.	.	.	.	.
Query SS confidence																			.	.	.													.	.	.	.	.	.
Query Sequence		F	E	D	A	V	E	K	A	E	K	L	V	A	M	G	G	I	.	.	.	G	H	T	S	C	L	Y	T	D	Q	D	N	.	.	.	.	.	.	Q	P	A	R	V	S	Y	F	G	Q	K	M	K	T	A	R	I	L	I	N	T	P	A	S	Q	G	G	I	G	D	L	Y	N	F	K	L	A	P	S	L	T	L
Query Conservation																			.	.	.													.	.	.	.	.	.
Alig confidence																			.	.	.													.	.	.	.	.	.
Template Conservation
Template Sequence		E	E	L	A	F	R	F	A	V	N	T	I	N	R	N	R	T	L	L	P	N	T	T	L	T	Y	D	T	Q	K	I	N	L	Y	D	S	F	E	A	S	K	K	A	C	D	Q	L	S	L	G	V	A	A	I	F	G	P	S	H	S	S	S	A	N	A	V	Q	S	I	C	N	A	L	G	V	P	H	I	Q	T
Template Known Secondary structure																	S	S	S	S	S	S												T	T																		S						S	S														T	T			B
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	C	G	S	W	G	G	N	S	I	S	E	N	V	G	P	K	H	L	I	N	K	K	T	V	A	K	R	A	E	N	M	L	W	H	K	L	P	K	S	I	Y	F	R	R	G	S	L	P	I	A	L	D	E	V	I	T	D	G	H	K	R	A	L	I	V	T	D	R	F	L	F	N	N	G	Y	A	D	Q	I
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.																																.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.																																.
Template Sequence		R	W	K	H	Q	V	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	K	D	S	F	Y	V	S	L	Y	P	D	.	.	.	F	S	S	L	S	R	A	I	L	D	L	V	Q	F	F	K	W	K	T	V	T	V	V	Y	D	D	S	T	G	L	I	.	R	L	Q	E	L
Template Known Secondary structure		S						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S					S	B		.	.	.	T	T	T												T	T		S							S	S	T					.		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.																																.
Template SS confidence
		102	.	.	.	.	.	.	.																					110	.	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.
		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	V	L	K	A	A	G	V	E	T	E	V	F	F	E	V	E	A	D	P	T	L	S	I	V	R	K	G	A	E	L	A	N	S	F	K	P	D	V	I	I	A	L	G	G	G	S	P	M	D	A	A	K	I	M	W	V	M	Y	E	H	P
Query Conservation
Alig confidence																.	.	.																													.	.
Template Conservation																.	.	.																													.	.
Template Sequence		I	K	A	P	S	R	Y	N	L	R	L	K	I	R	.	.	.	Q	L	P	A	D	T	K	D	A	K	P	L	L	K	E	M	K	R	G	K	E	F	H	V	I	F	D	C	.	.	S	H	E	M	A	A	G	I	L	K	Q	A	L	A	M	G
Template Known Secondary structure			T	G	G	G	T	S	S							.	.	.				S	S	G	G	G											T	T								S	.	.																T
Template Predicted Secondary structure																.	.	.																													.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions