Job Description P0A9Q7 Confidence 100.00% Date Thu Jan 5 11:11:00 GMT 2012 Rank 66 Aligned Residues 278 % Identity 18% Template c3clhA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: crystal structure of 3-dehydroquinate synthase (dhqs)from2 helicobacter pylori Resolution 2.40 Å

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		459	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		S	I	Y	F	R	R	G	S	L	P	I	A	L	D	E	V	I	T	D	G	H	K	R	A	L	I	V	T	D	R	F	L	F	N	N	G	Y	A	D	Q	I	T	S	V	L	K	A	A	G	V	E	T	E	V	F	F	E	V	E	A	D	P	T	L	S	I	V	R	K	G	A	E	L	A	N	S	F	K	P	.
Query Conservation																																																																																	.
Alig confidence											.	.	.	.	.	.	.	.																			.																																												.
Template Conservation											.	.	.	.	.	.	.	.																			.
Template Sequence		K	V	F	L	G	E	L	P	E	.	.	.	.	.	.	.	.	I	K	L	K	Q	K	A	L	I	I	S	D	S	I	V	A	G	L	.	H	L	P	Y	L	L	E	R	L	K	A	L	E	V	R	V	C	V	I	E	S	G	E	K	Y	K	N	F	H	S	L	E	R	I	L	N	N	A	F	E	M	Q	L	N
Template Known Secondary structure		B				S	S				.	.	.	.	.	.	.	.				S	S												T	T	.	T						T	T				S									S	S	G	G	G		S														T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.																			.
Template SS confidence
		14	.	.	.	.	.	20	.	.									.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
				538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	D	V	I	I	A	L	G	G	G	S	P	M	D	A	A	K	I	M	W	V	M	Y	E	H	P	E	T	H	F	E	E	L	A	L	R	F	M	D	I	R	K	R	I	Y	K	F	P	K	M	G	V	K	A	K	M	I	A	V	T	T	T	S	G	T	G	S	E	V	T	P	F	A	V	V	T	D	D	A
Query Conservation		.	.
Alig confidence		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	H	S	L	M	I	A	L	G	G	G	V	I	S	D	M	V	G	F	A	S	S	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	G	I	D	F	I	N	I	P	T	T	L	L	A	Q	V	D	A	S	V	G	G	K	T	G	I	N	T
Template Known Secondary structure		T	T								S														G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G										S						T	T	S	S	S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																												.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		616	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Q	K	Y	P	L	A	D	Y	A	L	T	P	D	M	A	I	V	D	A	N	L	V	M	D	M	P	K	S	L	C	A	F	G	G	L	D	A	V	T	H	A	M	E	A	Y	V	S	V	L	A	S	E	F	S	D	G	Q	A	L	Q	A	L	K	L	L	K	E	Y	L	P	A	S	Y	H	E	G	S	K
Query Conservation
Alig confidence														.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation														.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Sequence		P	Y	G	K	N	L	I	G	S	F	H	Q	.	P	K	A	V	Y	M	D	L	A	F	L	K	T	L	E	K	R	E	F	Q	A	G	V	A	E	I	I	K	M	A	V	C	F	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	L	V	E	R	L	E	T	.	K	D
Template Known Secondary structure		T	T											.		S						T	T	S	G	G	G	S																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	S
Template Predicted Secondary structure														.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																						.	.	.	.	.	.	190	.	.		.	.
		696	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.				.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.
Predicted Secondary structure																																									.	.	.
Query SS confidence																																									.	.	.
Query Sequence		N	P	V	A	R	E	R	V	H	S	A	A	T	I	A	G	I	A	F	A	N	A	F	L	G	V	C	H	S	M	A	H	K	L	G	S	Q	F	H	.	.	.	I	P	H	G	L	A	N	A	L	L	I	C	N	V	I	R	Y	N	A	N	D	N	P	T	K	Q	T	A	F	S	Q	Y	D	R	P	Q	A	R
Query Conservation																																									.	.	.
Alig confidence																																									.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	D	C	L	E	E	V	I	F	Q	S	V	N	I	K	A	Q	V	V	R	A	G	L	N	Y	G	H	T	F	G	H	A	I	E	K	E	T	D	Y	E	R	F	L	H	G	E	A	I	A	I	G	M	R	M	A	N	D	L	A	L	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T	T	S																		T	T	T	T	T	T											T	T	T	S	S																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
		773	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.						.	.	.								820	.	.	.	.	.	.	.	.	.	830	.
Predicted Secondary structure																																														.	.	.	.	.				.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.				.	.	.	.	.	.	.
Query Sequence		R	R	Y	A	E	I	A	D	H	L	G	L	S	A	P	G	D	R	T	A	A	K	I	E	K	L	L	A	W	L	E	T	L	K	A	E	L	G	I	P	K	S	I	R	.	.	.	.	.	E	A	G	.	.	.	.	.	.	.	V	Q	E	A	D	F	L	A	N	V	D	K
Query Conservation																																														.	.	.	.	.				.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.																			.	.	.	.	.				.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	M	L	T	L	K	E	.	.	.	.	.	Y	E	R	I	E	N	L	L	K	K	F	D	L	I	F	H	Y	K	F	I	L	P	K	G	V	G	A	F	E	V	A	S	H	I	P	K	E	T	I	I	K	V	L	E	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	S					.	.	.	.	.											T	T												S	S	S																	S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.
Template SS confidence
																267	.	.	270	.	.	.						.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions