Job Description P0A9Q7 Confidence 100.00% Date Thu Jan 5 11:11:00 GMT 2012 Rank 17 Aligned Residues 414 % Identity 21% Template c2w8qA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:succinate-semialdehyde dehydrogenase, PDBTitle: the crystal structure of human ssadh in complex with ssa. Resolution 2.40 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	V	T	N	V	A	E	L	N	A	L	V	E	R	V	K	K	A	Q	R	E	Y	A	S	F	T	Q	E	Q	V	D	K	I	F	R	A	A	A	L	A	A	A	D	A	R	I	P	L	A	K	M	A	V	A	E	S	G	M	G	I	V	E	D	K	V	I	K	N	H	F	A	S	E	Y	I	Y	N	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	D	C	G	V	R	E	A	R	A	A	V	R	A	A	Y	E	A	F	C	R	W	R	E	V	S	A	K	E	R	S	S	L	L	R	K	W	Y	N	L	M	I	Q	N	K	D	D	L	A	R	I	I	T	A	E	S	G	K	P	L	K	E	A	H	G	E	I	L	Y	S	A	F	F	L	E	W	F	S	E
Template Known Secondary structure																									T	T	S																			T
Template Predicted Secondary structure
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		81	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		K	D	E	K	T	C	G	.	.	V	L	S	E	D	D	T	F	G	T	I	T	I	A	E	P	I	G	I	I	C	G	I	V	P	T	T	N	P	T	S	T	A	I	F	K	S	L	I	S	L	K	T	R	N	A	I	I	F	S	P	H	P	R	A	K	D	A	T	N	K	A	A	D	I	V	L	Q	A	A	I
Query Conservation									.	.
Alig confidence									.	.																																																																						.	.
Template Conservation																																																																																.	.
Template Sequence		E	A	R	R	V	Y	G	D	I	I	H	T	P	A	K	D	R	R	A	L	V	L	K	Q	P	I	G	V	A	A	V	I	T	P	W	N	F	P	S	A	M	I	T	R	K	V	G	A	A	L	A	A	G	C	T	V	V	V	K	P	A	E	D	T	P	F	S	A	L	A	L	A	E	L	A	S	Q	A	.	.
Template Known Secondary structure			G	G	G									S		T	T																			S	S	S	T	T														T									T	T	S															.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.				.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																		.	.	.																											.	.	.	.
Query SS confidence																		.	.	.																											.	.	.	.
Query Sequence		A	A	G	A	P	K	D	L	I	G	W	I	D	Q	P	S	.	.	.	V	E	L	S	N	A	L	M	H	H	P	D	I	N	L	I	L	A	T	G	G	P	G	M	V	K	.	.	.	.	A	A	Y	S	S	G	K	P	A	I	G	V	G	A	G	N	T	P	V	V	I	D	E	T	A	D	I	K	R	A	V
Query Conservation																		.	.	.																											.	.	.	.
Alig confidence		.	.															.	.	.																											.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	G	I	P	S	G	V	Y	N	V	I	P	C	S	R	K	N	A	K	E	V	G	E	A	I	C	T	D	P	L	V	S	K	I	S	F	T	G	S	T	T	T	G	K	I	L	L	H	H	A	A	N	S	V	K	R	V	S	M	E	L	G	G	L	A	P	F	I	V	F	D	S	A	N	V	D	Q	A	V
Template Known Secondary structure		.	.	T			T	T	S																			T	T		T	T																						T	T	T																	T	T	S
Template Predicted Secondary structure		.	.
Template SS confidence
				248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	V	L	M	S	K	T	F	D	N	G	V	I	C	A	S	E	Q	S	V	V	V	V	D	S	V	Y	D	A	V	R	E	R	F	A	T	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	L	L	Q	G	K	E	L	K	A	V	Q	D	V	I	L	K	N	G	A	L	N	A	A
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	G	A	M	A	S	K	F	R	N	T	G	Q	T	A	V	C	S	N	Q	F	L	V	Q	R	G	I	H	D	A	F	V	K	A	F	A	E	A	M	K	K	N	L	R	V	G	N	G	F	E	E	G	T	T	Q	G	P	L	I	N	E	K	A	V	E	K	V	E	K	Q	V	N	D	A	V	S	K	G	A	T
Template Known Secondary structure										T	T	T	T		S	T	T	S																												B	S		T	T	S	T	T			B				S	S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		I	V	G	Q	P	A	Y	K	I	A	E	L	A	G	F	S	V	P	E	N	T	K	I	L	I	G	E	V	T	V	V	D	E	S	E	P	F	A	H	E	K	.	L	S	P	T	L	A	M	Y	R	A	K	D	F	E	D	A	V	E	K	A	E	K	L	V	A	M	G	G	I	G	H	T	S	C	L	Y	T	D
Query Conservation																																											.
Alig confidence										.	.	.	.	.	.	.	.																										.																							.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																																																	.	.	.	.
Template Sequence		V	V	T	G	G	K	R	H	.	.	.	.	.	.	.	.	Q	L	G	K	N	F	F	E	P	T	L	L	C	N	V	T	Q	D	M	L	C	T	H	E	E	T	F	G	P	L	A	P	V	I	K	F	D	T	E	E	E	A	I	A	I	A	N	A	.	.	.	.	A	D	V	G	L	A	G	Y	F	Y	S	Q
Template Known Secondary structure							S	B		.	.	.	.	.	.	.	.	T	T		T	T		B							S			G	G	G	G	T	T		T	T			S	S								S										T		.	.	.	.	S	S			S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																																																	.	.	.	.
Template SS confidence
		406	.	.	.	410	.	.	.									.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.					.	.	.	.	.	.	.	.	470	.	.	.
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.		.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		Q	D	N	Q	P	A	R	V	S	Y	F	G	Q	K	M	K	T	A	R	I	L	I	N	T	P	A	S	Q	G	G	I	G	D	L	Y	N	F	K	L	A	P	S	L	T	L	G	C	.	G	S	W	G	G	N	S	I	S	E	N	V	G	P	K	H	L	I	N	K	K	T	V
Query Conservation																																																	.
Alig confidence									.	.	.																		.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation									.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	P	A	Q	I	W	R	.	.	.	V	A	E	Q	L	E	V	G	M	V	G	V	N	E	G	L	I	.	.	.	.	.	.	.	.	.	.	.	S	S	V	E	C	P	F	G	G	V	K	Q	S	G	L	G	R	E	G	S	K	Y	G	I	D	E	Y	L	E	L	K	Y	V
Template Known Secondary structure									.	.	.					S		S	S					S		S			.	.	.	.	.	.	.	.	.	.	.			T	T	S		B			S	G	G	G			S		B	S	T	T	T	G	G	G	G	G
Template Predicted Secondary structure									.	.	.																		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		474	.	.	.	.	.	480				.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.												.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530