Job Description P0A9Q7 Confidence 100.00% Date Thu Jan 5 11:11:00 GMT 2012 Rank 12 Aligned Residues 433 % Identity 18% Template c2d4eB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:5-carboxymethyl-2-hydroxymuconate semialdehyde PDBTitle: crystal structure of the hpcc from thermus thermophilus hb8 Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	V	T	N	V	A	E	L	N	A	L	V	E	R	V	K	K	A	Q	R	E	Y	A	S	F	T	Q	E	Q	V	D	K	I	F	R	A	A	A	L	A	A	A	D	A	R	I	P	L	A	K	M	A	V	A	E	S	G	M	G	I	V	E	D	K	V	I	K	N	H	F	A	S	E	Y	I	Y	N	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	R	G	G	E	R	E	V	D	R	A	A	K	A	A	H	E	A	F	Q	R	W	S	R	T	K	A	K	E	R	K	R	Y	L	L	R	I	A	E	L	I	E	K	H	A	D	E	L	A	V	M	E	C	L	D	A	G	Q	V	L	R	I	V	R	A	Q	V	A	R	A	A	E	N	F	A	F	Y	A	E
Template Known Secondary structure																											S																			T																																			T
Template Predicted Secondary structure
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		81	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		K	D	E	K	T	C	G	.	.	V	L	S	E	D	D	T	F	G	T	I	T	I	A	E	P	I	G	I	I	C	G	I	V	P	T	T	N	P	T	S	T	A	I	F	K	S	L	I	S	L	K	T	R	N	A	I	I	F	S	P	H	P	R	A	K	D	A	T	N	K	A	A	D	I	V	L	Q	A	A	I
Query Conservation									.	.
Alig confidence									.	.																																																																						.	.
Template Conservation																																																																																.	.
Template Sequence		Y	A	E	H	A	M	E	D	R	T	F	P	V	D	R	D	W	L	Y	Y	T	V	R	V	P	A	G	P	V	G	I	I	T	P	W	N	A	P	L	M	L	S	T	W	R	I	A	P	A	L	A	F	G	N	T	V	V	L	K	P	A	E	W	S	P	F	T	A	T	K	L	A	E	I	L	K	E	A	.	.
Template Known Secondary structure		T	G	G	G	T	T								T	T	T																			S	S	S															T	T									T	T	S														T	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		A	A	G	A	P	K	D	L	I	G	W	I	D	Q	P	S	V	E	L	S	N	A	L	M	H	H	P	D	I	N	L	I	L	A	T	G	G	P	G	M	V	K	.	.	.	.	A	A	Y	S	S	G	K	P	A	I	G	V	G	A	G	N	T	P	V	V	I	D	E	T	A	D	I	K	R	A	V	A	S	V
Query Conservation																																												.	.	.	.
Alig confidence		.	.																																									.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	D	L	P	P	G	V	F	N	L	V	Q	G	F	G	E	E	A	G	A	A	L	V	A	H	P	L	V	P	L	L	T	L	T	G	E	T	E	T	G	K	I	V	M	R	N	A	A	D	H	L	K	R	L	S	P	E	L	G	G	K	S	P	A	L	V	F	A	D	A	D	L	E	R	A	L	D	A	V
Template Known Secondary structure		.	.	T			T	T	S								T	T	T									T	T								S													G	G	G	T																	T	T	S
Template Predicted Secondary structure		.	.
Template SS confidence
				216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270																.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	S	K	T	F	D	N	G	V	I	C	A	S	E	Q	S	V	V	V	V	D	S	V	Y	D	A	V	R	E	R	F	A	T	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	L	L	Q	G	K	E	L	K	A	V	Q	D	V	I	L	K	N	G	A	L	N	A	A	I	V	G	Q
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	F	Q	I	F	S	F	N	G	E	R	C	T	A	S	S	R	L	L	V	E	E	K	I	F	E	D	F	V	G	K	V	V	E	R	A	R	A	I	R	V	G	H	P	L	D	P	E	T	E	V	G	P	L	I	H	P	E	H	L	Q	R	V	L	G	Y	V	E	A	G	K	R	E	G	A	R	L	L	V	G
Template Known Secondary structure							G	G	G	G		S	T	T																									T			B			T	T	S	T	T		S	B				S																		T	T
Template Predicted Secondary structure
Template SS confidence
		294	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	Y	K	I	A	E	L	A	G	F	S	V	P	E	N	T	K	I	L	I	G	E	V	T	V	V	D	E	S	E	P	F	A	H	E	K	L	S	P	T	L	A	M	Y	R	A	K	D	F	E	D	A	V	E	K	A	E	K	L	V	A	M	G	G	I	G	H	T	S	C	L	Y	T	D	Q	D	N	Q	P
Query Conservation
Alig confidence																																																													.	.	.	.														.	.	.
Template Conservation																																																													.	.	.	.														.	.	.
Template Sequence		G	E	R	A	K	T	S	F	R	G	E	D	L	S	R	G	N	Y	L	L	P	T	V	F	V	G	E	N	H	M	K	I	A	Q	E	E	I	F	G	P	V	L	V	A	I	P	F	K	D	E	E	E	A	L	R	K	A	N	D	.	.	.	.	T	K	Y	G	L	A	A	Y	V	F	T	R	D	.	.	.	L
Template Known Secondary structure			S	B			B		T	T	S		B		T	T	T	T		B									T	T	S					S				S	S								S	S											.	.	.	.	S	S			S									.	.	.
Template Predicted Secondary structure																																																													.	.	.	.														.	.	.
Template SS confidence
		374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.					.	.	.	.	.	.	.	440	.	.	.	.	.				.
		380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.			.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		A	R	V	S	Y	F	G	Q	K	M	K	T	A	R	I	L	I	N	T	P	A	S	Q	G	G	I	G	D	L	Y	N	F	K	L	A	P	S	L	T	L	G	C	G	S	W	G	G	N	S	I	S	E	N	V	G	P	K	H	L	I	N	K	K	T	V	A	K	R	A	E	N	M	L	.	.	W	H
Query Conservation																																																																											.	.
Alig confidence																								.									.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation																								.									.	.	.	.	.	.	.	.	.
Template Sequence		E	R	A	H	R	L	A	L	E	L	E	A	G	M	V	Y	L	N	S	H	N	V	.	R	H	L	P	T	P	F	G	.	.	.	.	.	.	.	.	.	G	V	K	G	S	G	D	R	R	E	G	G	T	Y	A	L	D	F	Y	T	D	L	K	T	I	A	L	P	L	R	P	P	H	V	P	K	F
Template Known Secondary structure											S		S	S					S	S	S			.			T	T	S		B		.	.	.	.	.	.	.	.	.		S	G	G	G	B		S		B	S																		S	S
Template Predicted Secondary structure																								.									.	.	.	.	.	.	.	.	.
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.		.	470	.	.	.	.	.	.										.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.