Job Description P0A9Q7 Confidence 100.00% Date Thu Jan 5 11:11:00 GMT 2012 Rank 32 Aligned Residues 427 % Identity 18% Template c1t90B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	V	T	N	V	A	E	L	N	A	L	V	E	R	V	K	K	A	Q	R	E	Y	A	S	F	T	Q	E	Q	V	D	K	I	F	R	A	A	A	L	A	A	A	D	A	R	I	P	L	A	K	M	A	V	A	E	S	G	M	G	I	V	E	D	K	V	I	K	N	H	F	A	S	E	Y	I	Y	N	A	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	P	I	S	T	K	E	D	I	D	Y	A	A	Q	T	A	A	E	A	F	K	T	W	S	K	V	A	V	P	R	R	A	R	I	L	F	N	F	Q	Q	L	L	S	Q	H	K	E	E	L	A	H	L	I	T	I	E	N	G	K	N	T	K	E	A	L	G	E	V	G	R	G	I	E	N	V	E	F	A	A	G
Template Known Secondary structure																									T	T	S																			T																																		T	T
Template Predicted Secondary structure
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		81	.	.	.	.	.	.			.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence		K	D	E	K	T	C	G	.	.	V	L	S	E	D	D	T	F	G	T	I	T	I	A	E	P	I	G	I	I	C	G	I	V	P	T	T	N	P	T	S	T	A	I	F	K	S	L	I	S	L	K	T	R	N	A	I	I	F	S	P	H	P	R	A	K	D	A	T	N	K	A	A	D	I	V	L	Q	A	A	I
Query Conservation									.	.
Alig confidence									.	.																																																																						.	.
Template Conservation																																																																																.	.
Template Sequence		A	P	S	L	M	M	G	D	S	L	A	S	I	A	T	D	V	E	A	A	N	Y	R	Y	P	I	G	V	V	G	G	I	A	P	F	N	F	P	M	M	V	P	C	W	M	F	P	M	A	I	A	L	G	N	T	F	I	L	K	P	S	E	R	T	P	L	L	T	E	K	L	V	E	L	F	E	K	A	.	.
Template Known Secondary structure																T	T											S								S	S		T	T													T	T									T	T	S														T	.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																												.	.	.	.
Query SS confidence																																												.	.	.	.
Query Sequence		A	A	G	A	P	K	D	L	I	G	W	I	D	Q	P	S	V	E	L	S	N	A	L	M	H	H	P	D	I	N	L	I	L	A	T	G	G	P	G	M	V	K	.	.	.	.	A	A	Y	S	S	G	K	P	A	I	G	V	G	A	G	N	T	P	V	V	I	D	E	T	A	D	I	K	R	A	V	A	S	V
Query Conservation																																												.	.	.	.
Alig confidence		.	.															.																										.	.	.	.
Template Conservation		.	.															.
Template Sequence		.	.	G	L	P	K	G	V	F	N	V	V	Y	G	A	H	.	D	V	V	N	G	I	L	E	H	P	E	I	K	A	I	S	F	V	G	S	K	P	V	G	E	Y	V	Y	K	K	G	S	E	N	L	K	R	V	Q	S	L	T	G	A	K	N	H	T	I	V	L	N	D	A	N	L	E	D	T	V	T	N	I
Template Known Secondary structure		.	.	T			T	T	S							S		.										T	T								S															T	T																	T	T
Template Predicted Secondary structure		.	.															.
Template SS confidence
				196	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.																.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	M	S	K	T	F	D	N	G	V	I	C	A	S	E	Q	S	V	V	V	V	D	S	V	Y	D	A	V	R	E	R	F	A	T	H	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	L	Q	G	K	E	L	K	A	V	Q	D	V	I	L	K	N	G	A	L	N	A	A	I	V	G	Q
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		V	G	A	A	F	G	S	A	G	E	R	C	M	A	C	A	V	V	T	V	E	E	G	I	A	D	E	F	M	A	K	L	Q	E	K	V	A	D	I	K	I	G	N	G	L	D	D	G	V	F	L	G	P	V	I	R	E	D	N	K	K	R	T	L	S	Y	I	E	K	G	L	E	E	.	.	.	.	.	.	.
Template Known Secondary structure							G	G	G	G			T	T									T	T	T														T			B	S		T	T	S	T	T			B				S	S																		.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		P	A	Y	K	I	A	E	L	A	G	F	S	V	P	E	N	T	K	I	L	I	G	E	V	T	V	V	D	E	S	E	P	F	A	H	E	K	.	L	S	P	T	L	A	M	Y	R	A	K	D	F	E	D	A	V	E	K	A	E	K	L	V	A	M	G	G	I	G	H	T	S	C	L	Y	T	D	Q	D	N	Q
Query Conservation																																							.
Alig confidence																																							.																							.	.	.	.
Template Conservation																																																														.	.	.	.
Template Sequence		G	A	R	L	V	C	D	G	R	E	N	V	S	D	D	G	Y	F	V	G	P	T	I	F	D	N	V	T	T	E	M	T	I	W	K	D	E	I	F	A	P	V	L	S	V	I	R	V	K	N	L	K	E	A	I	E	I	A	N	K	.	.	.	.	S	E	F	A	N	G	A	C	L	F	T	S	N	S	N	A
Template Known Secondary structure		T							T	T	S	S			S	S	S	S									S			T	T	S					S				S	S								S	S											.	.	.	.	S	S			S
Template Predicted Secondary structure																																																														.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.					.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	R	V	S	Y	F	G	Q	K	M	K	T	A	R	I	L	I	N	T	P	A	S	Q	G	G	I	G	D	L	Y	N	F	K	L	A	P	S	L	T	L	G	C	G	S	W	G	G	N	S	I	S	E	N	V	G	P	K	H	L	I	N	K	K	T	V	A	K	R	A	E	N	M	L	W	H
Query Conservation
Alig confidence					.	.	.																											.						.	.	.	.	.		.																													.
Template Conservation					.	.	.																											.						.	.	.	.	.		.																													.
Template Sequence		I	R	Y	.	.	.	F	R	E	N	I	D	A	G	M	L	G	I	N	L	G	V	P	A	P	M	A	F	F	P	F	S	.	G	W	K	S	S	.	.	.	.	.	F	.	F	G	T	L	H	A	N	G	K	D	S	V	D	F	Y	T	R	K	K	V	V	T	A	R	Y	P	A	P	.	D	F
Template Known Secondary structure					.	.	.								S					S		S						T	T	S		B		.				T	T	.	.	.	.	.		.		S	S	S		B	S								T														.
Template Predicted Secondary structure					.	.	.																											.						.	.	.	.	.		.																													.
Template SS confidence
		422	.	.				.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.	.	.						.		.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.		.	.