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Job DescriptionP0A8F8
Confidence99.95%DateThu Jan 5 11:07:44 GMT 2012
Rank37Aligned Residues329
% Identity20%Templatec1s2mA_
PDB info PDB header:rna binding proteinChain: A: PDB Molecule:putative atp-dependent rna helicase dhh1; PDBTitle: crystal structure of the dead box protein dhh1p
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   12.......20.........30.........40.........50...... ...60.........70.........80.....
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Query Sequence  KPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADL. . . . . . QRPTMVLAPNKTLAAQLYGEMKEFFPENA
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Template Sequence  KPSPIQEEAIPVAITG. . . . . RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG
Template Known Secondary structure  S

T.....



TTS


TTS
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   68.70.........80... ......90.........100.........110.........120.........130.........140..
 
   86...90.........100.........110.........120.........130.........140.........150.........160.....
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Query Sequence  VEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGM
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Template Sequence  ISCMVTTGGTNLRDD. . . . . . . . . . . . . . . . . . . . . . . . . . . ILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMD
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SSS
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S
TT
S

TT

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   143......150....... ..160.........170.........180.........190.....
 
   166...170.........180.........190.........200.........210.........220.........230.........240.....
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Query Sequence  IIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTIYP
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Template Sequence  EAD. . . . . . . KMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGIT. . . . . . . . .
Template Known Secondary structure  S.......SSTTS
SS
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SS
S

SS
B
TT.........
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   196.. .200.........210.........220.........230.........240.........250.........
 
   246...250.........260.........270.........280.........290.........300.........310.........320.....
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Query Sequence  KTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTL
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   326...330.........340.........350.........360.........370.........380.........390.........400.....
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Query Sequence  FDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSG
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   406...410.........420.........430.........440.........450.........460.........470.........480.....
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Query Sequence  GDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVER
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Template Conservation  .................                                                               
Template Sequence  . . . . . . . . . . . . . . . . . QYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQER
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GGGS

S
SST


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   260.........270.........280.........290.........300.........310.........320..
 
   486...490.........500.........510.........520.........530.........540.........550. ........560....
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Query Sequence  MEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAI. LYGDKITPSMAKA
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Template Sequence  NKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPK. . . . . TAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYK
Template Known Secondary structure  TTSSSSS
SSSS


TTSS

S.....S
BSS
TT


GGG
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   323......330.........340.........350.........360.. .......370.........380.........390.......
 
   565....570
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Query Sequence  IGETER
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Template Conservation 
   
 
Template Sequence  IEQELG
Template Known Secondary structure  T
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   398.400...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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