 |
| Job Description | P0ACF0 | | Confidence | 11.04% | Date | Thu Jan 5 11:18:02 GMT 2012 |
| Rank | 60 | Aligned Residues | 34 |
| % Identity | 3% | Template | d1smyf2 |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
| Resolution | 2.70 |
|
| | |
10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . |
| Predicted Secondary structure | |
 | | | |
|
|
|
| | | | | | | | | | | | | | | | | | | | |
|
|
|  | |  |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence | |
I | A | E | K | A | E | L | S | K | T | Q | A | K | A | A | L | E | S | T | L | A | A | I | T | E | S | L | K | E | G | D | A | V | Q |
| Query Conservation | |
|
| | | | | |
| | |
|
| | |
|
| | |
| | | |
| | | |
| | |
| | |
| |
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation | |
|
| | |
|
|
|
| | | |
| | | | | |
|
|
| |
|
|
| | | | | | | | |
| |
| Template Sequence | |
V | G | A | F | F | G | V | T | R | E | R | I | R | Q | I | E | N | K | A | L | R | K | L | K | Y | H | E | S | R | T | R | K | L | R |
| Template Known Secondary structure | |
T | T | T | S | S | S | S |
| | | | | | | | | | | | | | | | | | | | | | T | T | S | S | S |
| Template Predicted Secondary structure | |
| | | | |
|
|
| | | | | | | | | | | | | | | | | | | | | | | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
386 | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
