Return to main results Retrieve Phyre Job Id

Job DescriptionP75780
Confidence100.00%DateThu Jan 5 12:14:03 GMT 2012
Rank2Aligned Residues658
% Identity18%Templatec3qlbA_
PDB info PDB header:metal transportChain: A: PDB Molecule:enantio-pyochelin receptor; PDBTitle: enantiopyochelin outer membrane tonb-dependent transporter from2 pseudomonas fluorescens bound to the ferri-enantiopyochelin
Resolution3.26 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   43......50.........60.........70.........80.........90.........100.........110.........120..
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  TLVVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVGAFFAGENGNSTTGDAIYMRG
Query Conservation   
 
                         
  
 

    
         
 
   


        
       
 


Alig confidence 






































































...





Template Conservation 
  
            


 
        
 

 

    
         
 
   


 
          ... 
 


Template Sequence  PDSATGPQAGYVAKRSLSGTKTDASLSEIPQSISVITRDQMDAQQVQSVNEALRYTAGVQANTTAASQRFD. . . TLSIRG
Template Known Secondary structure 


SSS

SSS


STTTSS
TTT
SSTT

SGGGSTT



SS

SS
...

TT
Template Predicted Secondary structure 






































...
Template SS confidence 















































































   23......30.........40.........50.........60.........70.........80.........90... ......
 
   123......130........ .140.........150.........160.........170.........180.........190.........
Predicted Secondary structure 









...





























Query SS confidence 















. . .




























































Query Sequence  ADTSNSIYIDGIRDIG. . . SVSRDTFNTEQVEVIKGPSGTDYGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTL
Query Conservation        
 


     ...   
    

 





  

 

  
 





 

                        
Alig confidence 















...




























































Template Conservation        
 


           
    

 


 

  

 

  
 





 

                        
Template Sequence  FDVTTGMLRDGLKGNTAQAWPKVEAYGLERIDVLKGPASVLFGQNSPGGVVNQISKRPLDKPFHEVQIQGGSFDRAQGQF
Template Known Secondary structure 
GGGTTB



SS





GGGS

SS

TT



SS
TTT
Template Predicted Secondary structure 








































Template SS confidence 















































































   100.........110.........120.........130.........140.........150.........160.........170.........
 
   200.........210.........220.........230.........240.........250.........260.........270.........
Predicted Secondary structure 





















































Query SS confidence 















































































Query Sequence  DVNQVIGDTTAVRLNVMGEKTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSAPSA
Query Conservation                                                                                  
Alig confidence 















































































Template Conservation                                                                                  
Template Sequence  DFSGPLDDEGQFLYRLVGLERDSGTQFDHIKDDKQYFAPSFTWKPNDDTSLTLLADYTQDTFGAPRVFLPAQGTLLGNPN
Template Known Secondary structure  SSSSSS
B
SSTT
B

SSSS


SS


BSBTTTB

TT
Template Predicted Secondary structure 













































Template SS confidence 















































































   180.........190.........200.........210.........220.........230.........240.........250.........
 
   280.........290.........300.........310.........320.........330.........340.........350.........
Predicted Secondary structure 





























































Query SS confidence 















































































Query Sequence  GTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVKQDYLMTAIMGGASNITQPTSDVNSW
Query Conservation                                                                                  
Alig confidence 

























































.................




Template Conservation                                                            .................     
Template Sequence  GKVRHNVFLDEPGLDNDRTQYSLGYLLEHRLNDVWSLNSSARYGHVNLLTNTASGMSL. . . . . . . . . . . . . . . . . APDLR
Template Known Secondary structure 



TT


S
SS


SSS.................
TTTS
Template Predicted Secondary structure 




























.................




Template SS confidence 















































































   260.........270.........280.........290.........300.........310....... ..320..
 
   360.........370.........380.........390.........400.........410.........420.........430.........
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  TWSRTANTKDVSNKILTNQTNLTSTFYTGSIGHDVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTRNGANA
Query Conservation                                       
                                          
Alig confidence 















































































Template Conservation                                       
                                          
Template Sequence  TLNRAAYRFRIVGDTYSLDNNAQARWNLGSTQMVSLLGIDYRRTREDYYLRGGSASPIDIYNPVHHHHGVFDPSTPFTNT
Template Known Secondary structure 

BSSSSSS







B


S
Template Predicted Secondary structure 



















































Template SS confidence 















































































   323......330.........340.........350.........360.........370.........380.........390.........400..
 
   440.........450.........460.........470.........480.........490.........500.........510.........
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  NGQTDTFAIYAFDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPTGVAKGSPVTTVDTAKSGNLMNWKAGA
Query Conservation           
            
  
 
 
                                                  
Alig confidence 





































......................



















Template Conservation                                        ......................                    
Template Sequence  VQRADQVGVYAQQQFTFDEHWVLTVGGRQDRSSARTDN. . . . . . . . . . . . . . . . . . . . . . RMNDSGSKQDDEKFTYRTGL
Template Known Secondary structure  TTT......................TTTT
Template Predicted Secondary structure 


















......................









Template SS confidence 















































































   406...410.........420.........430.........440... ......450.........460...
 
   520.........530.........540.........550.........560.........570.........580.........590.........
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  LYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKANTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQ
Query Conservation                                        
  
 

     
 
                
     
    
Alig confidence 


























...........









































Template Conservation                             ...........      
     
 
                           
Template Sequence  VYLADNGLAPYISYSTSFDPVLGTNFY. . . . . . . . . . . GTPYKPTSAKQSEVGVKYQPPGIDSYITLSLFDLTQENVLTT
Template Known Secondary structure 

TTS


SB
SS...........S
B




TTSS
Template Predicted Secondary structure 









...........




















Template SS confidence 















































































   464.....470.........480.........490 .........500.........510.........520.........530..
 
   600... ......610.........620.........630.........640.........650.........660.........670.. .
Predicted Secondary structure 


..























....
Query SS confidence 



. .




































































. . . .
Query Sequence  NDDG. . TYSQYGKKRVEGYEISVAGNITPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQAT. . . . D
Query Conservation      ..   
 
     
 

                
                       
         
   .... 
Alig confidence 



..









































.

























....
Template Conservation           
 
     
 
                 
          .     
  
   
         
        
Template Sequence  DPAQRLNKIQTGEINVRGIELEGKASLARGLDLLAALTYNDAEVSKSN. NPLEKGKRPTDTPEKMASLWADYTLPEGPLS
Template Known Secondary structure 
SSSTT

TTSSS
.
TT





TT

S

SSTTT
Template Predicted Secondary structure 











.



















Template SS confidence 















































































   533......540.........550.........560.........570.........580 .........590.........600.........610.
 
   674.....680.........690.........700.........710..... ....720.........730.........740.......
Predicted Secondary structure 












......













Query SS confidence 









































. . . . . .































Query Sequence  DISVGAGARYIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRV. . . . . . NRNLDFQLNVYNLFDTDYVASINKSGYRYHPG
Query Conservation           
                    
   
    
  ......     
 
 
 

 
  
              
Alig confidence 





















....















......
























..




Template Conservation           
            ....    
   
    
             
 
 
 

 
  
       ..     
Template Sequence  GLGFGAGVRYIGSTEADAANTQ. . . . RVPSYTLLDAAVHYDFDKLIPAAKGLRLAVNATNLTDKHYYEGCSLT. . NCSAG
Template Known Secondary structure  T


STTS

....

GGGSSGGGTTSTT




SS..B
Template Predicted Secondary structure 





....


















..

Template SS confidence 















































































   612.......620.........630... ......640.........650.........660.........670.........680 .....
 
   748.750.........760
Predicted Secondary structure 



Query SS confidence 












Query Sequence  EPRTFLLTANMHF
Query Conservation   

         
Alig confidence 












Template Conservation   

   
   
 
Template Sequence  YDRSVIASLRYRW
Template Known Secondary structure 



Template Predicted Secondary structure 


Template SS confidence 












   686...690........
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions