Job Description P75780 Confidence 25.16% Date Thu Jan 5 12:14:03 GMT 2012 Rank 42 Aligned Residues 176 % Identity 15% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		523	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	E	N	G	N	V	Y	I	N	Y	A	V	S	Q	Q	P	P	G	G	N	N	F	A	L	A	Q	S	G	S	G	N	S	A	N	R	T	D	F	K	P	Q	K	A	N	T	S	E	I	G	T	K	W	Q	V	L	D	K	R	L	L	L	T	A	A	L	F	R	T	D	I	E	N	E	V	E	Q	N	D	D
Query Conservation
Alig confidence																																																											.	.	.	.
Template Conservation																																																											.	.	.	.
Template Sequence		N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	.	.	.	.	V	Y	L	A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T
Template Known Secondary structure		G	G		B		S											T	T														S	T	T	S	S	S	S	S			S														T	T	.	.	.	.											S	S							T
Template Predicted Secondary structure																																																											.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.					.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		603	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	T	Y	S	Q	Y	G	K	K	R	V	E	G	Y	E	I	S	V	A	G	N	I	T	P	A	W	Q	V	I	G	G	Y	T	Q	Q	K	A	T	I	K	N	G	K	D	V	A	Q	D	G	S	S	S	L	P	Y	T	P	E	H	A	F	T	L	W	S	Q	Y	Q	A	T	D	D	I	S	V	G	A	G	A	R
Query Conservation
Alig confidence																																																			.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.
Template Sequence		V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	.	.	.	.	.	.	.	.	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N	X	N	V	W	V	D	Y	R
Template Known Secondary structure		T	T							S														T	T	S														S		T	T	T	T	S					.	.	.	.	.	.	.	.														S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290									.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		683	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	I	G	S	M	H	K	G	S	D	G	A	V	G	T	P	A	F	T	E	G	Y	W	V	A	D	A	K	L	G	Y	R	V
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		F	.	.	.	.	.	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure			.	.	.	.	.							S	S		T	T	T	T		S	S
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		314						.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions