Job Description P75780 Confidence 8.41% Date Thu Jan 5 12:14:03 GMT 2012 Rank 57 Aligned Residues 167 % Identity 10% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		565	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	N	T	S	E	I	G	T	K	W	Q	V	L	D	K	R	L	L	L	T	A	A	L	F	R	T	D	I	E	N	E	V	E	Q	N	D	D	G	T	Y	S	Q	Y	G	K	K	R	V	E	G	Y	E	I	S	V	A	G	N	I	T	P	A	W	Q	V	I	G	G	Y	T	Q	Q	K	A	T	I	K	N	G
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.														.	.	.
Template Conservation																																								.	.	.	.	.	.	.														.	.	.
Template Sequence		S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	D	G	S	A	R	A	G	D	M	.	.	.	.	.	.	.	E	N	R	T	W	S	G	L	F	S	A	K	Y	.	.	.	G	G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M
Template Known Secondary structure															S	S																T	T		T	T				.	.	.	.	.	.	.														.	.	.	T	T													S	S
Template Predicted Secondary structure																																								.	.	.	.	.	.	.														.	.	.
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.								.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.									660	.	.	.	.	.	.	.	.	.	670	.	.	.					.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.															.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.															.	.	.	.
Query Sequence		K	D	V	A	Q	D	G	S	S	S	L	P	Y	T	P	.	.	.	.	.	.	.	.	E	H	A	F	T	L	W	S	Q	Y	Q	A	T	D	.	.	.	.	D	I	S	V	G	A	G	A	R	Y	I	G	S	M	H	K	G	S	D	G	A	V	G	T	P	A	F	T	E	G	Y	W	V	A	D	A	K	L	G
Query Conservation																	.	.	.	.	.	.	.	.															.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.															.	.	.	.																					.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.
Template Sequence		R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	D	N	A	K	E	K	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	T	A	T	V	S	.	.	.	.	.	.	.	D	G	K	E	W	G	R	E	S	E	V	A
Template Known Secondary structure			B	T	T				T	T	S	T	T			S	S					S	T	T												T	T	T	T	T		T	T																T	T			.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.								.	.	.	.	370	.	.	.	.	.	.	.
		713	.	.	.					.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		Y	R	V	N	.	.	.	.	R	N	L	D	F	Q	L	N	V	Y	N	L	F	D	T	D	Y	V	A	S	I	N	K	S	G	Y	R	Y	H	P	G	E	P	R	T	F	L	L	T	A	N	M	H	F
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D	.	.	.	.	.	.	.	.	.	.	.	.	E	N	R	L	I	I	S	Y	P	L
Template Known Secondary structure						S	S	S	S	T	T													S	S		S					.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.													.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions