Job Description P75780 Confidence 96.97% Date Thu Jan 5 12:14:03 GMT 2012 Rank 18 Aligned Residues 273 % Identity 10% Template c3bryB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux Resolution 3.20 Å

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		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	V	N	P	V	T	L	P	A	V	N	I	Y	H	P	D	S	S	I	H	P	G	G	L	T	R	N	G	A	N	A	N	G	Q	T	D	T	F	A	I	Y	A	F	D	T	L	Q	I	T	R	D	F	E	L	N	G	G	I	R	L	D	N	Y	H	T	E	Y	D	S	A	T	A	C	G	G	S	G	R	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	I	F	A	E	G	G	L	G	T	Q	Y	G	G	S	S	F	L	S	R	T	S	N	G	V	D	T	G	L	D	Q	F	S	R	L	L	V	L	R	V	P	F	S	A	A	Y	H	V	T	D	K	L	T	V	G	A	S	V	D	A	V	W	T	S	L	N	L	G	T	L	L	D	V	S	Q	I	G	T	L	A
Template Known Secondary structure															S	S	S	B	T	T	B		S	S	S				S	S																			S	S	S	S																						S		S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		489	490	.	.	.	.	.	.	.	.	.	500	.	.	.										.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	C	P	T	G	V	A	K	G	S	P	V	T	T	.	.	.	.	.	.	.	.	.	V	D	T	A	K	S	G	N	L	M	N	W	K	A	G	A	L	Y	H	L	T	E	N	G	N	V	Y	I	N	Y	A	V	S	Q	Q	P	P	G	G	N	N	F	A	L	A	Q	S	G	S	G	N	S	A	N	R	T
Query Conservation																	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	Q	G	R	V	S	G	T	L	V	P	T	L	L	G	V	P	G	L	S	G	G	Y	I	D	F	S	G	V	Q	A	W	G	I	G	G	R	L	G	L	T	Y	Q	V	T	P	D	T	R	I	G	A	A	Y	Q	A	K	T	H	V	G	D	L	T	G	Q	A	T	L	S	A	V	G	N	I	P	L	K	G	D
Template Known Secondary structure		T	S	S	S				T	T	T	T	T	T	T	S	S	S			S																										T	T											B	B											B
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		560	.	.	.			.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.												.	.	.	.	.	.	.	620	.	.	.	.	.	.
Predicted Secondary structure						.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Query SS confidence						.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	F	K	P	.	.	Q	K	A	N	T	S	E	I	G	T	K	W	Q	V	L	D	K	R	L	L	L	T	A	A	L	F	R	T	D	I	E	N	E	V	E	Q	N	D	D	G	T	Y	S	Q	Y	G	K	K	R	.	.	.	.	.	.	.	.	.	.	.	V	E	G	Y	E	I	S	V	A	G	N	I	T	P
Query Conservation						.	.																																																		.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.															.																																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		V	T	V	R	N	F	Q	M	P	A	Q	L	T	V	G	I	S	H	Q	F	.	N	D	Q	L	S	V	S	A	D	Y	Q	R	V	F	W	S	S	V	M	K	D	M	N	V	G	F	V	Q	S	G	S	A	A	N	L	D	L	S	L	P	Q	N	Y	R	D	I	S	V	F	G	I	G	A	E	Y	R	Y	N	A
Template Known Secondary structure									B												S	.	S	S	S												G	G	G			S									S	S	S																												T
Template Predicted Secondary structure																						.
Template SS confidence
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
		627	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	W	Q	V	I	G	G	Y	T	Q	Q	K	A	T	I	K	N	G	K	D	V	A	Q	D	G	S	S	S	L	P	Y	T	P	E	H	A	F	T	L	W	S	Q	Y	Q	A	T	D	D	I	S	V	G	A	G	A	R	Y	I	G	S	M	H	K	G	S	D	G	A	V	G	T	P	A	F	T	E	G	Y	W	V
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	W	T	F	R	G	G	F	H	Y	A	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	L	T	G	G	V	S	Y	A	I	G	K	N	D	V	I	D	F	A	L	S	V	.	.	.	.	.	.	.	.	.	.	.	.	A	L	R	K	T	S	V	T	H	S	Q
Template Known Secondary structure		T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S	S	T	T										.	.	.	.	.	.	.	.	.	.	.	.				B
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		349	350	.	.	.	.	.	.	.	.	.	360	.																					.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.													.	.	.	.	390	.	.	.	.	.	.
		707	.	.	710	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	A	K	L	G	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	N	A	V	I	A	Y	Q
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions