Job Description P75780 Confidence 3.86% Date Thu Jan 5 12:14:03 GMT 2012 Rank 74 Aligned Residues 210 % Identity 15% Template c2y0kA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:pyroglutatmate porin opdo; PDBTitle: crystal structure of pseudomonas aeruginosa opdo Resolution 2.30 Å

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		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	L	Y	H	L	T	E	N	G	N	V	Y	I	N	Y	A	V	S	Q	Q	P	P	G	G	N	N	F	A	L	A	Q	S	G	S	G	N	S	A	N	R	T	D	F	K	P	Q	K	A	N	T	S	E	I	G	T	K	W	Q	V	L	D	K	R	L	L	L	T	A	A	L	F	R	T	D	I	E	N	E
Query Conservation
Alig confidence																																									.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																									.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		A	L	L	D	V	Q	E	I	D	G	L	T	L	R	G	A	H	L	D	R	N	K	L	N	S	S	S	D	Y	Q	V	F	S	A	N	R	I	G	G	.	.	.	.	.	.	.	.	R	S	D	A	F	D	F	A	G	G	D	Y	R	L	T	P	A	.	.	.	L	T	A	S	L	H	Q	G	R	L	K	D	I
Template Known Secondary structure									S	S	S														T	T		S	S		B					T	T	T			.	.	.	.	.	.	.	.			S											S	S	S	S	.	.	.											T	T	T
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170									.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200
		597	.	.	600	.	.	.	.	.	.	.	.	.																								610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640								.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Query Sequence		V	E	Q	N	D	D	G	T	Y	S	Q	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	K	R	V	E	G	Y	E	I	S	V	A	G	N	I	T	P	A	W	Q	V	I	G	G	Y	T	Q	Q	K	A	T	.	.	.	.	.	.	.	I	K	N	G	K	D
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.																.	.	.	.	.	.	.
Template Conservation																																																			.	.	.
Template Sequence		Y	R	Q	T	F	A	G	L	V	H	T	L	D	L	G	R	S	L	K	S	D	L	R	F	A	R	A	S	E	D	G	G	F	R	E	L	D	N	R	A	F	G	A	L	F	S	L	R	L	.	.	.	G	A	H	A	V	A	A	G	Y	Q	R	I	S	G	D	D	P	Y	P	Y	I	A	G	S	D	P	Y	L
Template Known Secondary structure																																T	T	S																	.	.	.	T	T												S	S	S					B	T	T	S
Template Predicted Secondary structure																																																			.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.				250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		647	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.					.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.					.	.
Predicted Secondary structure																													.	.	.	.																																												.	.	.	.
Query SS confidence																													.	.	.	.																																												.	.	.	.
Query Sequence		V	A	Q	D	G	S	S	S	L	P	Y	T	P	E	H	A	F	T	L	W	S	Q	Y	Q	A	T	D	.	.	.	.	D	I	S	V	G	A	G	A	R	Y	I	G	S	M	H	K	G	S	D	G	A	V	G	T	P	A	F	T	E	G	Y	W	V	A	D	A	K	L	G	Y	R	V	N	.	.	.	.	R	N
Query Conservation																													.	.	.	.																																												.	.	.	.
Alig confidence																													.	.	.	.																					.	.	.	.	.	.	.																	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.
Template Sequence		V	N	F	I	Q	I	G	D	F	G	N	V	D	E	R	S	W	Q	L	R	Y	D	Y	D	F	G	A	L	G	L	P	G	L	S	F	M	S	R	Y	V	S	G	D	N	V	A	R	G	A	A	N	.	.	.	.	.	.	.	D	G	K	E	W	E	R	N	T	D	L	G	Y	V	V	Q	S	G	P	L	K	N
Template Known Secondary structure		T	T			S	S					S	T	T													T	T	T	T		T	T																T	T			.	.	.	.	.	.	.																	S	S	T	T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330								.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	F	Q	L	N	V	Y	N	L	F	D	T	D	Y	V	A	S	I	N	K	S	G	Y	R	Y	H	P	G	E	P	R	T	F	L	L	T	A	N	M	H	F
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.															.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.															.	.	.	.	.
Template Sequence		L	G	V	K	W	.	.	.	.	.	.	.	.	R	N	A	T	V	R	S	N	F	A	N	D	L	D	.	.	.	.	.	E	N	R	L	I	L	S	Y	S	L
Template Known Secondary structure							.	.	.	.	.	.	.	.								S	S	S					.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.															.	.	.	.	.
Template SS confidence
		353	.	.	.	.									.	.	360	.	.	.	.	.	.	.	.	.	370	.						.	.	.	.	.	.	.	.	380	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions