|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | |
|
|
. | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |
|
|
|
|
| . | . | . |
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
Query Sequence |   |
E | D | L | K | R | Q | V | L | E | A | N | L | A | L | P | K | H | N | L | V | T | L | T | W | G | N | V | S | A | V | D | R | . |
E | R | G | V | F | V | I | K | P | S | G | V | D | Y | S | V | M | T | A | D | D | M | V | V | V | S | I | E | T | G | E | V | V | E | G | T | K | K | . |
. |
. |
P | S | S | D | T | P |
Query Conservation |   |
  |   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |
|
|   |   |   |   |   |
|
|
|
|   |
|   |   | . |
|   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |
|   |   |   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   | . | . | . |
|
|   |
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |
|
|   |   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|
|
|
|   |
|   |
|   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |
|   |   |   |
|
|
|   |
|
|   |   | . |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|   |   |
Template Sequence |   |
W | E | V | R | V | K | L | A | A | A | Y | R | L | A | A | L | K | R | W | T | D | H | I | Y | T | H | F | S | A | R | V | P | G | P | D | E | H | F | L | I | N | A | F | G | L | L | F | D | E | I | T | A | S | N | L | V | K | V | D | I | D | . |
G | T | I | V | D | D | P | T | G | L | G | I | N | Y | A | G | Y | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| B | T | T | B |
|
|  |  |  |  |
| S | S | S | S |
|  |  |  |  |
|
| T | T |
|
| G | G | G |
|
| G | G | G |
|  |  |  |  | T | T | . |
|
|  |  |  |
| T | T | S |
|
|
|
| T | T | T | T |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | |
. | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . |
  |
  |   |
79 | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | H | R | L | L | Y | Q | A | F | P | S | I | G | G | I | V | H | T | H | S | R | H | A | T | I | W | A | Q | A | G | Q | S | I | P | A | T | G | T | T | H | A | D | Y | F | Y | G | T | I | P | C | T | R | K | M | T | D | A | E | I | N | G | E | Y | E | W | E | T | G | N | V | I | V | E | T | F | E | K | Q | G | I |
Query Conservation |   |
  |
|   |   |
|
|   |   |   |
|
|
|   |
|
|
|
|   |
|   |   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
Template Conservation |   |
|
|   |   |
|
|   |   |
|
|
|
|   |
|
|
|
|   |
|   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . |   |   |   |
|   |   |   |   |
|   |   |   |
| . | . | . | . | . |
Template Sequence |   |
I | H | S | A | I | H | A | A | R | H | D | L | Q | A | V | L | H | T | H | T | R | D | G | I | A | V | S | A | Q | K | D | G | L | L | P | I | S | Q | H | S | I | A | . |
F | S | G | R | V | A | Y | H | G | Y | E | G | I | A | . |
. |
. |
. |
. |
L | D | L | S | E | R | E | R | L | V | A | D | L | . |
. |
. |
. |
. |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  | T | S | T | T |
| S |
| S |
| S |  |  |  |  | T | . | T | T | T | T |  |  |  |  |
|
|
|
| S | S | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  | . |  |
|
|
|
|  |  |  |
|
|
|
|
|
| . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
109 | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | |
. | . | . | . | . | . | . | . | . | 160 | . | . | . | . | |
|
|
|
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | |
|
|
|
|
  |
  |   |
159 | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | |
. | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 |
Predicted Secondary structure |   |
 |
|
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | A | Q | M | P | G | V | L | V | H | S | H | G | P | F | A | W | G | K | N | A | E | D | A | V | H | N | A | I | V | L | E | E | V | A | Y | M | G | I | F | C | R | Q | L | A | P | Q | . |
L | P | D | M | Q | Q | T | L | L | D | K | H | Y | L | R | K | H | G | A | K | A | Y | Y | G |
Query Conservation |   |
  |   |   |   |   |   |   |
|
|
|   |
|
|
|   |   |   |   |
|   |
|   |   |
|
|   |   |   |   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |
|   |   | . |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . |   |   |   |   |
|
|
|
|   |
|
|
|
|
|   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |
|
|   |   |
|   |
|   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
. |
. |
G | D | K | S | V | X | I | L | R | N | H | G | L | L | T | G | G | V | S | V | E | H | A | I | Q | Q | L | H | A | L | E | Y | A | C | N | I | Q | I | A | A | Q | S | A | G | N | A | E | L | V | F | P | P | R | E | V | I | A | K | V | E | E | Q | A | K | A | I | G | N | G | P | G |
Template Known Secondary structure |   |
. | . | T | T |
| S |  |  |  |  | T | T | T |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G |
| G | G | G |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| S |  |  |
Template Predicted Secondary structure |   |
. | . |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
178 | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . |
  |