Job Description P76347 Confidence 61.21% Date Wed Jan 25 15:21:07 GMT 2012 Rank 86 Aligned Residues 213 % Identity 11% Template d2gufa1 SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 1.95

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		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence		Q	F	D	F	L	H	P	W	Y	E	T	P	D	N	L	F	F	S	Q	H	T	L	H	R	T	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	F	T	P	T	W	M	S	G	I	N	F	F	F	D	H	D	L	S	R	Y	.	H	S	R	A	G	I	G	A	E	Y	W	R	D	Y	L	K	L	S	S	N
Query Conservation																																																													.
Alig confidence																																																													.
Template Conservation
Template Sequence		G	A	A	R	S	D	D	N	S	Q	F	G	R	H	G	T	W	Q	T	S	A	G	W	E	F	I	E	G	Y	R	F	I	A	S	Y	G	T	S	Y	K	A	P	N	L	G	Q	L	Y	G	F	Y	G	N	P	N	L	D	P	E	K	S	K	Q	W	E	G	A	F	E	G	L	T	A	G	V	N	W	R	I	S
Template Known Secondary structure										T	T	T																T	T																					S	T	T			T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.			.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.	.
Query SS confidence																	.	.
Query Sequence		G	Y	L	R	L	T	N	W	R	S	A	P	E	L	D	.	.	N	D	Y	E	A	R	P	A	N	G	W	D	V	R	A	E	S	W	L	P	A	W	P	H	L	G	G	K	L	V	Y	E	Q	Y	Y	G	D	E	V	A	L	F	D	K	D	D	R	Q	S	N	P	H	A	I	T	A	G	L	N	Y	T	P	F
Query Conservation																	.	.
Alig confidence																	.	.																					.												.																													.
Template Conservation																																							.												.																													.
Template Sequence		G	Y	R	N	D	V	S	D	L	I	D	Y	D	D	H	T	L	K	Y	Y	N	E	G	K	A	R	I	K	G	V	E	A	T	A	N	F	D	.	T	G	P	L	T	H	T	V	S	Y	D	.	Y	V	D	A	R	N	A	I	T	D	T	P	L	L	R	R	A	K	Q	Q	V	K	Y	Q	L	D	W	Q	.	L
Template Known Secondary structure															T	T	T	T																					.		T	T									.							T	T	T			B		T	T			S											.
Template Predicted Secondary structure																																							.												.																													.
Template SS confidence
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.		.	.	.	.	.	.	.	.	480	.	.		.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510		.
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.																.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	L	M	T	F	S	A	E	Q	R	Q	G	K	Q	G	E	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	R	F	A	V	D	F	T	W	Q	P	G	S	A	M	Q	K	Q	L	D	P	N	E	V	A	A	R	R	S	L	A	G	S	R	Y	D	L	V	D	R	N	N	N	I	V	L	E
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.										.	.
Template Conservation																																																							.	.	.	.	.	.										.	.
Template Sequence		Y	D	F	D	W	G	I	T	Y	Q	Y	L	G	T	R	Y	D	K	D	Y	S	S	Y	P	Y	Q	T	V	K	M	G	G	V	S	L	W	D	L	A	V	A	Y	P	V	T	S	H	L	T	V	R	G	K	.	.	.	.	.	.	I	A	N	L	F	D	K	D	Y	.	.	A	G	R	E	Y	T	L	S	G	S
Template Known Secondary structure		T	T																			S	S	S	S																				S	S	S	S							.	.	.	.	.	.			S	T	T					.	.
Template Predicted Secondary structure																																																							.	.	.	.	.	.										.	.
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.							.	.	.	.	.	570	.	.	.			.	.	.	.	.	.	580	.	.	.
		425	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		592	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions