Job Description P76347 Confidence 51.69% Date Wed Jan 25 15:21:07 GMT 2012 Rank 109 Aligned Residues 187 % Identity 11% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	P	W	Y	E	T	P	D	N	L	F	F	S	Q	H	T	L	H	R	T	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	F	T	P	T	W	M	S	G	I	N	F	F	F	D	H	D	L	S	R	Y	H	S	R	A	G	I	G	A	E	Y	W	R	D	Y	L	K	L	S	S	N	G	Y	L	R	L	T
Query Conservation
Alig confidence																																																								.	.	.
Template Conservation																																																								.	.	.
Template Sequence		T	T	D	K	R	D	D	K	Q	F	T	W	R	G	G	V	N	Y	L	F	D	N	G	V	T	P	Y	F	S	Y	S	E	S	F	E	P	S	S	Q	V	G	K	D	G	N	I	F	A	P	S	K	G	K	Q	.	.	.	Y	E	V	G	V	K	Y	V	P	E	D	R	P	I	V	V	T	G	A	V	Y	N	L
Template Known Secondary structure																						T	T	S																	B		T	T	S		B									.	.	.										S	S	S
Template Predicted Secondary structure																																																								.	.	.
Template SS confidence
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520				.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.								.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																																											.											.	.
Query SS confidence																				.	.	.	.	.	.	.																																											.											.	.
Query Sequence		N	W	R	S	A	P	E	L	D	N	D	Y	E	A	R	P	A	N	.	.	.	.	.	.	.	G	W	D	V	R	A	E	S	W	L	P	A	W	P	H	L	G	G	K	L	V	Y	E	Q	Y	Y	G	D	E	V	A	L	F	D	K	D	D	R	Q	S	N	P	.	H	A	I	T	A	G	L	N	Y	T	.	.
Query Conservation																				.	.	.	.	.	.	.																																											.											.	.
Alig confidence																				.	.	.	.	.	.	.																																											.											.	.
Template Conservation
Template Sequence		T	K	T	N	N	L	M	A	D	P	E	G	S	F	F	S	V	E	G	G	E	I	R	A	R	G	V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	M	A	S	L	W	A	D	Y	T	F	F
Template Known Secondary structure											S	S			S																					S	S	S	S																		T	T	T	T	T				T	T			S
Template Predicted Secondary structure
Template SS confidence
		544	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.
				358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.											.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	P	F	P	L	M	T	F	S	A	E	Q	R	Q	G	K	Q	G	E	N	D	.	.	.	.	.	.	.	.	.	.	T	R	F	A	V	D	F	T	W	Q	P	G	S	A	M	Q	K	Q	L	D
Query Conservation		.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y	G	D	P	A	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N
Template Known Secondary structure		S	S	T	T	T	T															S	S	T	T			S																T	T	T	T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions