Job Description P76347 Confidence 52.92% Date Wed Jan 25 15:21:07 GMT 2012 Rank 104 Aligned Residues 298 % Identity 12% Template c3rfzB_ PDB info PDB header:cell adhesion/transport/chaperone Chain: B: PDB Molecule:outer membrane usher protein, type 1 fimbrial synthesis; PDBTitle: crystal structure of the fimd usher bound to its cognate fimc:fimh2 substrate Resolution 2.80 Å

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		197	.	.	200	.	.	.	.	.	.							.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.																						.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.																						.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	L	K	N	S	Q	F	D	F	.	.	.	.	.	.	L	H	P	W	Y	E	T	P	D	N	L	F	F	S	Q	H	T	L	H	R	T	.	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	F	T	P	T	W	M	S	G	I	N	F	F	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation												.	.	.	.	.	.																						.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																						.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	L	Q	R	E	G	H	T	R	Y	S	I	T	A	G	E	Y	R	S	G	N	A	Q	Q	E	K	P	R	F	F	Q	S	T	L	L	H	G	L	P	A	G	W	T	I	Y	G	G	T	Q	L	A	D	R	Y	R	A	F	N	F	G	I	G	K	N	M	G	A	L	G	A	L	S	V	D	M	T	Q	A	N	S
Template Known Secondary structure		T				T	T														S		T	T	B															G	G	G											T	T														T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
						255	.	.	.	.	260	.	.	.	.	.	.	.								.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure		.	.	.	.														.	.	.	.	.	.	.
Query SS confidence		.	.	.	.														.	.	.	.	.	.	.
Query Sequence		.	.	.	.	D	H	D	L	S	R	Y	H	S	R	A	G	I	.	.	.	.	.	.	.	G	A	E	Y	W	R	D	Y	L	K	L	S	S	N	G	Y	L	R	L	T	N	W	R	S	A	P	E	L	D	N	D	Y	E	A	R	P	A	N	G	W	D	V	R	A	E	S	W	L	P	A	W	P	H	L	G	G
Query Conservation		.	.	.	.														.	.	.	.	.	.	.
Alig confidence		.	.	.	.														.	.	.	.	.	.	.																														.
Template Conservation																																																							.
Template Sequence		T	L	P	D	D	S	Q	H	D	G	Q	S	V	R	F	L	Y	N	K	S	L	N	E	S	G	T	N	I	Q	L	V	G	Y	R	Y	S	T	S	G	Y	F	N	F	A	D	T	T	Y	S	R	M	N	Y	.	N	L	A	Y	N	K	R	G	K	L	Q	L	T	V	T	Q	Q	L	G	R	T	S	T	L	Y	L
Template Known Secondary structure				T	T	S																		T	T	S													T	T									B	S	S				.		T	T	S															S	S	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.		.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		K	L	V	Y	E	Q	Y	Y	G	D	E	V	A	L	F	D	K	D	D	R	Q	S	N	P	H	A	I	T	A	G	L	N	Y	T	P	F	P	L	M	T	F	S	A	E	Q	R	Q	G	K	.	Q	G	E	N	D	T	R	F	A	V	D	F	T	W	Q	P	G	S	A	M	Q	K	Q	L	D	P	N	E	V	A
Query Conservation																																																			.
Alig confidence													.	.	.	.	.	.	.	.																				.											.
Template Conservation													.	.	.	.	.	.	.	.																				.
Template Sequence		S	G	S	H	Q	T	Y	W	G	T	S	.	.	.	.	.	.	.	.	N	V	D	E	Q	F	Q	A	G	L	N	T	A	F	E	D	I	N	W	.	T	L	S	Y	S	L	T	K	N	A	W	Q	K	G	R	D	Q	M	L	A	L	N	V	N	I	P	F	S	H	W	L	R	S	D	S	K	S	Q	W	R	H
Template Known Secondary structure									S	S			.	.	.	.	.	.	.	.															T	T				.										S	S	S		S													S	G	G	G	S		T	T			S	G	G	G	G
Template Predicted Secondary structure													.	.	.	.	.	.	.	.																				.
Template SS confidence
		501	.	.	.	.	.	.	.	.	510	.									.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530		.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.			.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		A	R	R	S	L	A	G	S	R	Y	D	L	V	D	R	N	N	N	I	V	L	E	Y	.	.	R	K	K	E	L	V	R	L	T	L	T	D	P	V	T	G	K	S	G	E	V	K	S	L	V	S	S	L	Q	T	K	Y	A	L	K	G	Y	N	V	E	A	T	A	L	E	A	A	G	G	K	V	V	T	T	G
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		A	S	A	S	Y	S	M	S	H	D	L	N	G	R	M	T	N	L	A	G	V	Y	G	T	L	L	E	D	N	N	L	S	Y	S	V	Q	T	G	Y	A	G	G	G	D	G	N	S	G	S	T	G	Y	A	T	L	N	Y	R	G	G	Y	G	N	A	N	I	G	Y	S	H	S	D	D	I	K	Q	L	Y	Y	G
Template Known Secondary structure												S	S	S													S	T	T														S	T	T	T															S	S											S	S
Template Predicted Secondary structure
Template SS confidence
		572	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	I	L	V	T	L	P	A	Y	R	F	T	S	T	P	E	T	D	N	T	W	P	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	S	G	G	V	L	A	H	A	N	G	V	T	L	G	Q	P	L	N	D	T	V	V	L
Template Known Secondary structure										T	T						S				S	S
Template Predicted Secondary structure
Template SS confidence
		652	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions