Job Description P76347 Confidence 96.11% Date Wed Jan 25 15:21:07 GMT 2012 Rank 26 Aligned Residues 197 % Identity 12% Template c3qq2C_ PDB info PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka Resolution 3.00 Å

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		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.
Query SS confidence																																																											.
Query Sequence		I	T	L	G	V	D	E	D	F	S	L	K	N	S	Q	F	D	F	L	H	P	W	Y	E	T	P	D	N	L	F	F	S	Q	H	T	L	H	R	T	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	F	T	P	T	.	W	M	S	G	I	N	F	F	F	D	H	D	L	S	R	Y	H	S	R	A	G	I
Query Conservation																																																											.
Alig confidence																															.	.	.																										.
Template Conservation																															.	.	.
Template Sequence		L	E	I	G	L	D	R	G	W	S	A	S	G	G	R	W	Y	A	G	G	L	L	G	Y	T	Y	A	D	R	.	.	.	T	Y	P	G	D	G	G	G	K	V	K	G	L	H	V	G	G	Y	A	A	Y	V	G	D	G	G	Y	Y	L	D	T	V	L	R	L	G	R	Y	D	Q	Q	Y	N	I	A	G	T	D
Template Known Secondary structure													T	T																	.	.	.		B	T	T	T	B																		S	S	S	B																				S	S
Template Predicted Secondary structure																															.	.	.
Template SS confidence
		775	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.				.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.
		268	.	270	.	.	.	.	.							.	.	.	.	280	.	.	.	.	.	.	.		.	.	290	.	.	.	.	.	.	.	.	.	300	.							.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.													.															.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.													.															.	.	.	.	.	.
Query Sequence		G	A	E	Y	W	R	D	Y	.	.	.	.	.	.	L	K	L	S	S	N	G	Y	L	R	L	T	.	N	W	R	S	A	P	E	L	D	N	D	Y	E	A	.	.	.	.	.	.	R	P	A	N	G	W	D	V	R	A	E	S	W	L	P	A	W	P	H	L	G	G	K	L	V	Y	E	Q	Y	Y	G	D	E
Query Conservation										.	.	.	.	.	.													.															.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.													.															.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	R	V	T	A	D	Y	R	T	S	G	A	A	W	S	L	E	G	G	R	R	F	E	L	P	N	D	W	F	A	E	P	Q	A	E	V	M	L	W	R	T	S	G	K	R	Y	R	A	S	N	G	L	R	V	K	V	D	A	N	T	A	T	L	G	R	L	G	L	R	F	G	R	R	I	A	L	A	G	G
Template Known Secondary structure		S																				B					G	G	G																						S	S	S																										T	T	S
Template Predicted Secondary structure
Template SS confidence
		852	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.
		335	.	.			.	.	340									.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.				.	.	.	.	.	.	.	.																																				.	.
Query SS confidence					.	.				.	.	.	.	.	.	.	.																																				.	.
Query Sequence		V	A	L	.	.	F	D	K	.	.	.	.	.	.	.	.	D	D	R	Q	S	N	P	H	A	I	T	A	G	L	N	Y	T	P	F	P	L	M	T	F	S	A	E	Q	R	Q	G	K	Q	G	E	.	.	N	D	T	R	F	A	V	D	F	T	W	Q	P
Query Conservation					.	.				.	.	.	.	.	.	.	.																																				.	.
Alig confidence					.	.				.	.	.	.	.	.	.	.																																				.	.
Template Conservation
Template Sequence		N	I	V	Q	P	Y	A	R	L	G	W	T	Q	E	F	K	S	T	G	R	H	G	R	V	E	L	G	A	G	V	D	A	A	L	G	K	G	H	N	L	Y	A	S	Y	E	Y	A	A	G	D	R	I	N	I	P	W	S	F	H	A	G	Y	R	Y	S	F
Template Known Secondary structure																						B														G	G	G	B												S	S													B
Template Predicted Secondary structure
Template SS confidence
		932	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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