Job Description P76347 Confidence 29.71% Date Wed Jan 25 15:21:07 GMT 2012 Rank 175 Aligned Residues 189 % Identity 15% Template c3jtyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5 Resolution 2.58 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	D	E	D	F	S	L	K	N	S	Q	F	D	F	L	H	P	W	Y	E	T	P	D	N	L	F	F	S	Q	H	T	L	H	R	T	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	F	T	P	T	W	M	S	G	I	N	F	F	F	D	H	D	L	S	R	Y	H	S	R	A	G	I	G	A	E
Query Conservation
Alig confidence																																										.	.															.
Template Conservation																																										.	.															.
Template Sequence		Q	G	A	E	Y	A	F	N	D	K	R	T	Q	I	A	L	W	N	A	Q	L	K	D	I	Y	S	Q	Q	F	I	N	L	I	H	S	Q	P	L	G	D	.	.	W	T	L	G	A	N	L	G	F	F	Y	G	K	E	.	D	G	S	A	R	A	G	D	M	E	N	R	T	W	S	G	L	F	S	A	K	Y	G
Template Known Secondary structure									T	T	T	T											T	T	T															S	S	.	.															.		T	T		T	T																	T
Template Predicted Secondary structure																																										.	.															.
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.			250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		271	.	.	.	.	.				.	.	.	280	.	.	.	.	.										.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.										.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.										.	.	.	.	.	.	.	.	.
Query Sequence		Y	W	R	D	Y	L	.	.	.	K	L	S	S	N	G	Y	L	R	.	.	.	.	.	.	.	.	.	L	T	N	W	R	S	A	P	E	L	D	N	D	Y	E	A	R	P	A	N	G	W	D	V	R	A	E	S	W	L	P	A	W	P	H	L	G	G	K	L	V	Y	E	Q	Y	Y	G	D	E	V	A	L	F
Query Conservation								.	.	.										.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.										.	.	.	.	.	.	.	.	.											.							.	.	.																																.	.
Template Conservation																																							.							.	.	.																																.	.
Template Sequence		G	N	T	F	Y	V	G	L	Q	K	L	T	G	D	S	A	W	M	R	V	N	G	T	S	G	G	T	L	A	N	D	S	Y	N	A	S	Y	.	D	N	A	K	E	K	.	.	.	S	W	Q	V	R	H	D	Y	N	F	A	A	L	G	V	P	G	L	T	L	M	N	R	Y	I	S	G	S	N	V	H	.	.
Template Known Secondary structure		T													S	S					B	T	T				T	T	S	T	T			S	S				.		S	T	T			.	.	.										T	T	T	T	T		T	T															.	.
Template Predicted Secondary structure																																							.							.	.	.																																.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.				330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.								.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.
Query Sequence		D	K	D	D	R	Q	S	N	P	H	A	I	T	A	G	L	N	Y	T	P	.	.	.	.	.	.	.	F	P	L	M	T	F	S	A	E	Q	R	Q	G	K	Q	G	E	N	D	T	R	F	A	V	D	F	T	W	Q	P
Query Conservation																						.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	A	T	V	S	D	G	K	E	W	G	R	E	S	E	V	A	Y	T	V	Q	S	G	T	L	K	N	L	N	L	K	W	R	N	S	T	M	R	R	D	F	S	N	N	E	F	D	E	N	R	L	I	I	S	Y	P	L
Template Known Secondary structure			T	T																			S	S	S	S	T	T													S	S		S
Template Predicted Secondary structure
Template SS confidence
		361	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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