Job Description P76347 Confidence 81.85% Date Wed Jan 25 15:21:07 GMT 2012 Rank 52 Aligned Residues 156 % Identity 10% Template c3a2rX_ PDB info PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis Resolution 2.30 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	T	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	F	T	P	T	W	M	S	G	I	N	F	F	F	D	H	D	L	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	H	S	R	A	G	I	G	A	E	Y	W	R	D	Y	L	K	L	S	S	N	G	Y	L	R	L	T
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	H	T	K	S	S	R	E	S	Y	H	A	G	L	K	Y	E	N	A	G	F	F	G	Q	Y	A	G	S	F	A	K	Y	A	D	L	N	T	D	A	E	R	V	A	V	N	T	A	N	A	H	P	V	K	D	Y	Q	V	H	R	V	V	A	G	Y	D	A	N	D	L	Y	V	S	V	A	G	Q	Y	E	A	A
Template Known Secondary structure		S	T	T	S															T	T																	T	T	S		B			T	T		T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	R	S	A	P	E	L	D	N	D	Y	E	A	R	P	A	N	G	W	D	V	R	A	E	S	W	L	P	A	W	P	H	L	G	G	K	L	V	Y	E	Q	Y	Y	G	D	E	V	A	L	F	D	K	D	D	R	Q	S	N	P	H	A	I	T	A	G	L	N	Y	T	P	F	P	L	M	T	F	S	A	E
Query Conservation
Alig confidence										.	.																					.	.	.	.	.
Template Conservation										.	.																					.	.	.	.	.
Template Sequence		K	N	N	E	V	G	S	I	.	.	K	G	K	K	H	E	Q	T	Q	V	A	A	T	A	A	Y	R	F	G	N	.	.	.	.	.	V	T	P	R	V	S	Y	A	H	G	F	K	A	K	V	N	G	V	K	D	A	N	Y	Q	Y	D	Q	V	I	V	G	A	D	Y	D	F	S	K	R	T	S	A	L	V	S
Template Known Secondary structure					S	S	S	T	T	.	.	T	T																B	T	T	.	.	.	.	.																T	T				G	G	G													S	S	S	S
Template Predicted Secondary structure										.	.																					.	.	.	.	.
Template SS confidence
		243	.	.	.	.	.	.	250			.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		368	.						370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.
Query SS confidence				.	.	.	.	.
Query Sequence		Q	R	.	.	.	.	.	Q	G	K	Q	G	E	N	D	T	R	F	A	V	D	F	T	W	Q	P
Query Conservation				.	.	.	.	.
Alig confidence				.	.	.	.	.
Template Conservation
Template Sequence		A	G	W	L	K	Q	G	K	G	A	G	K	V	E	Q	T	A	S	M	V	G	L	R	H	K	F
Template Known Secondary structure								S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions