Job Description P76347 Confidence 22.43% Date Wed Jan 25 15:21:07 GMT 2012 Rank 214 Aligned Residues 113 % Identity 19% Template c2xwxB_ PDB info PDB header:chitin-binding protein Chain: B: PDB Molecule:glcnac-binding protein a; PDBTitle: vibrio cholerae colonization factor gbpa crystal structure Resolution 1.80 Å

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		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.												.	.	440	.	.	.	.	.									.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Query Sequence		L	A	G	S	R	Y	D	L	V	D	R	N	N	N	I	V	L	E	Y	R	K	K	E	L	V	R	L	T	L	T	D	.	.	.	.	.	.	.	.	.	.	.	P	V	T	G	K	S	G	E	.	.	.	.	.	.	.	.	V	K	S	L	V	S	S	L	Q	T	K	Y	A	L	K	G	Y	N	V	E	A	T
Query Conservation																																	.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Alig confidence																					.												.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		L	N	G	D	Q	F	V	P	V	Y	G	T	N	P	I	Y	L	K	E	.	G	S	G	L	K	S	V	E	I	G	Y	Q	I	E	A	P	Q	P	E	Y	S	L	T	V	S	G	L	A	K	E	Y	E	I	G	E	Q	P	I	Q	L	D	L	T	L	E	A	Q	G	E	M	S	A	E	L	T	V	Y	N	H	H
Template Known Secondary structure				T	T						S	S								T	.	T	S	S																										S						S	S												S	S										T	T
Template Predicted Secondary structure																					.
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		A	L	E	A	A	G	G	K	V	V	T	T	G	K	D	I	.	L	V	T	L	P	A	Y	R	F	T	S	T	P	E	T	D	N	T	W	P	I	E	V	T	A	E	D	V	K	G	N	L	S	N	R	E	Q	S	M	V	V	V
Query Conservation																		.
Alig confidence																		.												.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		Q	K	P	L	A	S	W	S	Q	A	M	T	D	G	E	L	K	S	I	T	L	E	L	S	E	A	K	A	.	.	.	.	.	G	H	H	M	L	V	S	R	I	K	D	R	D	G	N	L	Q	D	Q	Q	T	L	D	F	M	L
Template Known Secondary structure														T	T										S				S	.	.	.	.	.												T	T	S
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.						.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions