Job Description P76347 Confidence 91.14% Date Wed Jan 25 15:21:07 GMT 2012 Rank 47 Aligned Residues 188 % Identity 15% Template c2vqiA_ PDB info PDB header:transport Chain: A: PDB Molecule:outer membrane usher protein papc; PDBTitle: structure of the p pilus usher (papc) translocation pore Resolution 3.2 Å

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		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.																									.
Query SS confidence																																			.	.	.	.	.	.																									.
Query Sequence		G	T	A	R	I	T	L	G	V	D	E	D	F	S	L	K	N	S	Q	F	D	F	L	H	P	W	Y	E	T	P	D	N	L	.	.	.	.	.	.	F	F	S	Q	H	T	L	H	R	T	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	.	F	T	P	T	W	M	S	G	I	N	F	F	F	D	H	D
Query Conservation																																			.	.	.	.	.	.																									.
Alig confidence										.	.	.	.	.																					.	.	.	.	.	.																	.								.												.	.	.	.
Template Conservation										.	.	.	.	.																																											.																				.	.	.	.
Template Sequence		G	R	L	D	V	E	V	I	.	.	.	.	.	E	Q	N	G	R	K	K	T	F	Q	V	D	T	A	S	V	P	Y	L	T	R	P	G	Q	V	R	Y	K	L	V	S	G	R	S	R	G	Y	E	G	P	V	F	.	A	T	G	E	A	S	W	G	L	S	N	Q	W	S	L	Y	G	G	A	.	.	.	.	V
Template Known Secondary structure		S								.	.	.	.	.		T	T	S																		T	T																				.										S	S	S								.	.	.	.
Template Predicted Secondary structure										.	.	.	.	.																																											.																				.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.						.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.					.
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.		.	.	.	280	.	.																																									.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	R	Y	H	S	R	A	G	I	G	A	E	Y	W	R	D	Y	L	.	K	L	S	S	N	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	L	R	L	T	N	W	R	S	A	P	E	L	D
Query Conservation																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	G	D	Y	N	A	L	A	A	G	A	G	W	D	L	G	V	P	G	T	L	S	A	D	I	T	Q	S	V	A	R	I	E	G	E	R	T	F	Q	G	K	S	W	R	L	S	Y	S	K	R	F	D	D	I	T	F	A	G	Y	R	F	S	E	R	N	Y	X	T	X	E	Q	Y	L	N	A	R	Y	R	N
Template Known Secondary structure				S	S													S	S	S															T	T	T																													T	T													S
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		N	D	Y	E	A	R	P	A	N	G	W	D	V	R	A	E	S	W	L	P	A	W	P	.	H	L	G	G	K	L	V	Y	E	Q	Y	Y	G	D	E	V	A	L	F	D	K	D	D	R	Q	S	N	P	H	A	I	T	A	G	L	N	Y	T	P	F	P	L	M	T	F	S	A	E	Q	R	Q	G	K	Q	G	E
Query Conservation																									.
Alig confidence		.																							.																.	.	.	.	.																						.													.
Template Conservation		.																																							.	.	.	.	.																						.													.
Template Sequence		.	D	Y	S	S	R	E	K	E	X	Y	T	V	T	L	N	K	N	V	A	D	W	N	T	S	F	N	L	Q	Y	S	R	Q	T	Y	W	D	I	R	.	.	.	.	.	K	T	D	Y	Y	T	V	S	V	N	R	Y	F	N	V	F	L	Q	G	V	A	.	V	G	L	S	A	S	R	S	K	Y	L	G	.	R
Template Known Secondary structure		.																			T	T	T	T													S	S	S		.	.	.	.	.															S	S	S					.											T	T	.
Template Predicted Secondary structure		.																																							.	.	.	.	.																						.													.
Template SS confidence
			462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.						500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520		.	.	.	.	.	.	.	.	.	530	.	.		.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390
Predicted Secondary structure
Query SS confidence
Query Sequence		N	D	T	R	F	A	V	D	F	T	W	Q	P	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	D	S	A	Y	L	R	I	S	V	P	L	G	T
Template Known Secondary structure															T	T
Template Predicted Secondary structure
Template SS confidence
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions