Job Description P76347 Confidence 36.36% Date Wed Jan 25 15:21:07 GMT 2012 Rank 148 Aligned Residues 182 % Identity 13% Template c2qtkB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable porin; PDBTitle: crystal structure of the outer membrane protein opdk from2 pseudomonas aeruginosa Resolution 2.80 Å

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		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.													.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	V	D	E	D	F	S	L	K	N	S	Q	F	D	F	L	H	P	W	Y	E	T	P	D	N	L	F	F	S	Q	H	T	L	H	R	T	D	E	R	T	Q	I	N	N	G	L	G	W	R	H	F	T	.	.	.	.	.	.	.	.	.	.	.	.	P	T	W	M	S	G	I	N	F	F	F	D	H	D	L
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.												.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																																										.	.																																						.
Template Sequence		A	G	A	E	Y	R	F	N	R	E	R	T	Q	L	G	L	W	H	G	Q	L	E	D	V	Y	R	Q	S	Y	A	N	L	L	H	K	Q	R	V	G	D	.	.	W	T	L	G	A	N	L	G	L	F	V	D	R	D	D	G	A	A	R	A	G	E	I	D	S	H	T	V	Y	G	L	F	S	A	G	I	G	.
Template Known Secondary structure									T	T	T	T											T	T	T															T	T	.	.																T	T		T	T																	T	.
Template Predicted Secondary structure																																										.	.																																						.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.						.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.
Predicted Secondary structure																																.	.	.	.	.																															.	.
Query SS confidence																																.	.	.	.	.																															.	.
Query Sequence		S	R	Y	H	S	R	A	G	I	G	A	E	Y	W	R	D	Y	L	K	L	S	S	N	G	Y	L	R	L	T	N	.	.	.	.	.	W	R	S	A	P	E	L	D	N	D	Y	E	A	R	P	A	N	G	W	D	V	R	A	E	S	W	L	P	A	W	.	.	P	H	L	G	G	K	L	V	Y	E	Q	Y	Y
Query Conservation																																.	.	.	.	.																															.	.
Alig confidence		.	.	.	.	.	.	.	.	.																						.	.	.	.	.																															.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	L	H	T	F	Y	L	G	L	Q	K	V	G	G	D	S	G	W	Q	S	V	Y	G	S	S	G	R	S	M	G	N	D	M	F	N	G	N	F	T	N	A	D	E	R	S	W	Q	V	R	Y	D	Y	D	F	V	G	L	G	W	P	G	L	I	G	M	V	R	Y	G	H	G	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	T													S	S					B	T	T			G	G	G	S	T	T		B	T	T	B				S	B	T												G	G	G	G	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.			360	.					.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.			.	.	.	.
Query SS confidence																														.	.			.	.	.	.
Query Sequence		G	D	E	V	A	L	F	D	K	D	D	R	Q	S	N	P	H	A	I	T	A	G	L	N	Y	T	P	F	.	.	P	L	.	.	.	.	M	T	F	S	A	E	Q	R	Q	G	K	Q	G	E	N	D	T	R	F	A	V	D	F	T	W	Q	P
Query Conservation																														.	.			.	.	.	.
Alig confidence											.	.	.	.																.	.			.	.	.	.
Template Conservation											.	.	.	.
Template Sequence		N	A	T	T	K	A	G	S	G	.	.	.	.	G	K	E	W	E	R	D	V	E	L	G	Y	T	V	Q	S	G	P	L	A	R	L	N	V	R	L	N	H	A	S	N	R	R	S	F	N	S	D	F	D	Q	T	R	L	V	V	S	Y	P	L
Template Known Secondary structure				B		S	S		S		.	.	.	.																S	S	S	S	T	T													S	S	S
Template Predicted Secondary structure											.	.	.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions