Job Description P76347 Confidence 96.56% Date Wed Jan 25 15:21:07 GMT 2012 Rank 17 Aligned Residues 149 % Identity 19% Template c2k0lA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles. Resolution UNK

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		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.				.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.
Query SS confidence																																										.	.	.
Query Sequence		I	N	N	G	L	G	W	R	H	F	T	P	T	W	M	S	G	I	N	F	F	F	D	H	D	L	S	R	Y	H	S	R	A	G	I	G	A	E	Y	W	.	.	.	R	D	Y	L	K	L	S	S	N	G	Y	L	R	L	T	N	W	R	S	A	P	E	L	D	N	D	Y	E	A	R	P	A	N	G	W	D	V
Query Conservation																																										.	.	.
Alig confidence																			.																							.	.	.									.															.	.
Template Conservation																			.																																		.															.	.
Template Sequence		A	G	G	K	L	G	W	S	Q	Y	H	D	T	G	F	Y	G	.	N	G	F	Q	N	N	N	G	P	T	R	N	D	Q	L	G	A	G	A	F	G	G	Y	Q	V	N	P	Y	L	G	F	E	M	.	G	Y	D	W	L	G	R	M	A	Y	K	G	S	V	.	.	D	N	G	A	F	K	A	Q	G	V	Q	L
Template Known Secondary structure									S					S					.		S				S				S																	T	T						.													S	S	.	.				S	S
Template Predicted Secondary structure																			.																																		.															.	.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.		.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.															350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	E	S	W	L	P	A	W	P	H	L	G	G	K	L	V	Y	E	Q	Y	Y	G	D	E	V	A	L	F	D	K	D	D	R	Q	S	N	P	H	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	A	G	L	N	Y	T	P	F	P	L	M	T	F	S	A	E	Q	R	Q	G	K	Q	G	E
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		T	A	K	L	G	Y	P	I	T	D	D	L	D	I	.	.	.	.	.	.	Y	T	R	L	G	G	M	V	W	R	A	D	S	K	G	N	Y	A	S	T	G	V	S	R	S	E	H	D	T	G	V	S	P	V	F	A	G	G	V	E	W	A	V	T	R	D	I	A	T	R	L	E	Y	Q	W	V	N	N	I	G
Template Known Secondary structure									S	S	S	S				.	.	.	.	.	.																S				S	S	S																						S	S	S								S	S		S	S
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110							.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
		376	.	.										.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.
Query Sequence		N	D	T	.	.	.	.	.	.	.	.	.	R	F	A	V	D	F	T	W	Q	P	G	S	A
Query Conservation					.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	A	G	T	V	G	T	R	P	D	N	G	M	L	S	L	G	V	S	Y	R	F	G	Q	E
Template Known Secondary structure				S					S	S		S
Template Predicted Secondary structure
Template SS confidence
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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