Return to main results Retrieve Phyre Job Id

Job DescriptionP76347
Confidence67.74%DateWed Jan 25 15:21:07 GMT 2012
Rank77Aligned Residues111
% Identity21%Templatec2iwvD_
PDB info PDB header:ion channelChain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   235....240.........250...... ...260.........270.........280....... ..290.........300
Predicted Secondary structure 



.......










.......





Query SS confidence 





















. . . . . . .






























. . . . . . .












Query Sequence  NGLGWRHFTPTWMSGINFFFDH. . . . . . . DLSRYHSRAGIGAEYWRDYLKLSSNGYLRLT. . . . . . . NWRSAPELDNDYE
Query Conservation   
   
        
 
 
 
 .......       
   
 
          
 
    ....... 
           
Alig confidence 





.














.......






























.......












Template Conservation   

 

.          

 
                 


       
  



  
  
                   
Template Sequence  TGLQYT. FNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYLPLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDF
Template Known Secondary structure  .
SSSB
SSTT

TT


TT
TTTTT

S
Template Predicted Secondary structure 


.




































Template SS confidence 















































































   155....160 .........170.........180.........190.........200.........210.........220.........230...
 
   301........310.........320.........330.........340.........350.......
Predicted Secondary structure 
































Query SS confidence 
























































Query Sequence  ARPANGWDVRAESWLPAWPHLGGKLVYEQYYGDEVALFDKDDRQSNPHAITAGLNYT
Query Conservation     
 
 
          
 
          
  
  
        
     
    
Alig confidence  ........






















..











.










Template Conservation  ........ 
 
    
 
     
  
  
..
  
   


  .     


 

Template Sequence  . . . . . . . . NRVGLFYGYDFQNGLSVSLEYAF. . EWQDHDEGDSDK. FHYAGVGVNYS
Template Known Secondary structure  ........
SSS..SSS

.
Template Predicted Secondary structure  ........


..







.
Template SS confidence 
























































   234.....240.........250...... ...260........ .270.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions