 |
Job Description | P76347 | Confidence | 67.74% | Date | Wed Jan 25 15:21:07 GMT 2012 |
Rank | 77 | Aligned Residues | 111 |
% Identity | 21% | Template | c2iwvD_ |
PDB info |
PDB header:ion channel | Chain: D: PDB Molecule:outer membrane protein g; |
PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
|
Resolution | 2.3 Å |
|
 |
  |   |
235 | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
. | . | 290 | . | . | . | . | . | . | . | . | . | 300 |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
N | G | L | G | W | R | H | F | T | P | T | W | M | S | G | I | N | F | F | F | D | H | . |
. |
. |
. |
. |
. |
. |
D | L | S | R | Y | H | S | R | A | G | I | G | A | E | Y | W | R | D | Y | L | K | L | S | S | N | G | Y | L | R | L | T | . |
. |
. |
. |
. |
. |
. |
N | W | R | S | A | P | E | L | D | N | D | Y | E |
Query Conservation |   |
  |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |
|   |
|   |
|   | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   | . | . | . | . | . | . | . |   |
|   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|
| . |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |
|   |   |
|
|
|
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
T | G | L | Q | Y | T | . |
F | N | E | T | V | A | L | R | V | N | Y | Y | L | E | R | G | F | N | M | D | D | S | R | N | N | G | E | F | S | T | Q | E | I | R | A | Y | L | P | L | T | L | G | N | H | S | V | T | P | Y | T | R | I | G | L | D | R | W | S | N | W | D | W | Q | D | D | I | E | R | E | G | H | D | F |
Template Known Secondary structure |   |
 |  |  |  |  |  | . |
| S | S | S | B |  |  |  |  |  |  |  |  |  |  |  |  |
| S | S | T | T |
|
| T | T |
|  |  |  |  |  |  |  |  |  |
|
|  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| T | T | T | T | T |
|
| S |
|  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|
|  |  |  | . |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
155 | . | . | . | . | 160 | |
. | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . |
  |
  |   |
301 | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | R | P | A | N | G | W | D | V | R | A | E | S | W | L | P | A | W | P | H | L | G | G | K | L | V | Y | E | Q | Y | Y | G | D | E | V | A | L | F | D | K | D | D | R | Q | S | N | P | H | A | I | T | A | G | L | N | Y | T |
Query Conservation |   |
  |   |   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |   |
Alig confidence |   |
. | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. | . | . | . | . | . | . | . |   |
|   |
|   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |
|   |   |
| . | . |
|   |   |
|   |   |   |
|
|
|   |   | . |   |   |   |   |   |
|
|
|   |
|
|
Template Sequence |   |
. |
. |
. |
. |
. |
. |
. |
. |
N | R | V | G | L | F | Y | G | Y | D | F | Q | N | G | L | S | V | S | L | E | Y | A | F | . |
. |
E | W | Q | D | H | D | E | G | D | S | D | K | . |
F | H | Y | A | G | V | G | V | N | Y | S |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |
| S | S | S |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  | S | S | S |
|
|  |  | . |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  | . | . |  |  |  |
|
|
|
|
|
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
|
|
|
|
|
|
|
234 | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | |
|
. | . | . | 260 | . | . | . | . | . | . | . | . | |
. | 270 | . | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|