Job Description P76347 Confidence 100.00% Date Wed Jan 25 15:21:07 GMT 2012 Rank 1 Aligned Residues 460 % Identity 23% Template c1cwvA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:invasin; PDBTitle: crystal structure of invasin: a bacterial integrin-binding protein Resolution 2.30 Å

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		1859	1860	.	.	.	.	.	.	.	.	.	1870	.	.	.	.	.	.	.	.	.	1880	.	.	.	.	.	.	.	.	.	1890	.	.	.	.	.	.	.	.	.	1900	.	.	.	.	.	.	.	.	.	1910	.	.	.	.	.	.	.	.	.	1920	.	.	.	.	.	.	.	.	.	1930	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	T	L	T	A	S	S	P	L	I	G	V	Y	A	P	T	G	A	T	L	T	A	T	L	T	S	A	N	G	T	P	V	E	G	Q	V	I	N	F	S	V	T	P	E	G	A	T	L	S	G	G	K	V	R	T	N	S	S	G	Q	A	P	V	V	L	T	S	N	K	V	G	T	Y	T	V	T	A	S	F
Query Conservation
Alig confidence																																														.
Template Conservation																																														.
Template Sequence		T	L	T	A	A	V	I	G	D	G	A	P	A	N	G	K	T	A	I	T	V	E	F	T	V	A	D	F	E	G	K	P	L	A	G	Q	E	V	V	I	T	T	N	N	.	G	A	L	P	N	K	I	T	E	K	T	D	A	N	G	V	A	R	I	A	L	T	N	T	T	D	G	V	T	V	V	T	A	E	V
Template Known Secondary structure									S		S			S	S	S	S	S											T	T	S		B			S									T	.	T		B	S									T	T	S							B		S	S
Template Predicted Secondary structure																																														.
Template SS confidence
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.		.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
		1939	1940	.	.	.	.	.	.	.	.	.	1950	.	.	.	.	.	.	.	.	.	1960	.	.	.	.	.	.	.	.	.	1970	.	.	.	.	.	.	.	.	.	1980	.	.	.	.	.	.	.	.	.	1990	.	.	.	.	.	.	.	.	.	2000	.	.	.	.	.	.	.	.	.	2010	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	G	V	T	I	Q	T	Q	T	T	V	K	V	T	G	N	S	S	T	A	H	V	A	S	F	I	A	D	P	S	T	I	A	A	T	N	T	D	L	S	T	L	K	A	T	V	E	D	G	S	G	N	L	I	E	G	L	T	V	Y	F	A	L	K	S	G	S	A	T	L	T	S	L	T	A	V	T	D	Q
Query Conservation
Alig confidence				.	.	.																																																															.	.	.	.
Template Conservation				.	.	.																																																															.	.	.	.
Template Sequence		E	G	.	.	.	Q	R	Q	S	V	D	T	H	F	V	K	G	T	I	A	A	D	K	S	T	L	A	A	V	P	T	S	I	I	A	D	G	L	M	A	S	T	I	T	L	E	L	K	D	T	Y	G	D	P	Q	A	G	A	N	V	A	F	D	T	T	L	G	.	.	.	.	N	M	G	V	I	T	D	H	N
Template Known Secondary structure		T	T	.	.	.														B		G	G	G							S	S				T	T	S	S										B	B	T	T	S		B			S								S	S	S	.	.	.	.									S
Template Predicted Secondary structure				.	.	.																																																															.	.	.	.
Template SS confidence
		583	.				.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.					.	.	.	650	.	.	.	.	.
		2019	2020	.	.	.	.	.	.	.	.	.	2030	.	.	.	.	.	.	.	.	.	2040	.	.	.	.	.	.	.	.	.	2050	.				.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.	.	.	.
Predicted Secondary structure																																			.	.	.
Query SS confidence																																			.	.	.
Query Sequence		N	G	I	A	T	T	S	V	K	G	A	M	T	G	S	V	T	V	S	A	V	T	T	A	G	G	M	Q	T	V	D	I	T	.	.	.	L	V	A	G	P	A	D	T	S	Q	S	V	L	K	S	N	R	S	S	L	K	G	D	Y	T	D	S	A	E	L	R	L	V	L	H	D	I	S	G	N	P	I	K	V
Query Conservation																																			.	.	.
Alig confidence																																			.	.	.
Template Conservation
Template Sequence		D	G	T	Y	S	A	P	L	T	S	T	T	L	G	V	A	T	V	T	V	K	V	D	G	A	A	F	S	V	P	S	V	T	V	N	F	T	A	D	P	I	P	D	A	G	R	S	S	F	T	V	S	T	P	D	I	L	A	D	G	T	M	S	S	T	L	S	F	V	P	V	D	K	N	G	H	F	I	S	G
Template Known Secondary structure		S	S									S	S											T	T																S	S			T	T	T						S		S				T	T	S											B		T	T	S		B			S
Template Predicted Secondary structure
Template SS confidence
		656	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.
		2096	.	.	.	2100	.	.	.	.	.	.	.	.	.	2110	.	.	.	.	.	.	.	.	.	2120	.	.	.	.	.	.	.	.	.	2130	.	.	.	.	.	.	.	.	.	2140	.	.	.	.	.	.	.	.	.	2150	.	.	.	.	.	.	.	.	.	2160	.	.	.	.	.	.	.	.	.	2170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	G	M	E	F	V	Q	S	G	T	N	V	P	Y	I	K	I	S	A	I	D	Y	S	L	N	I	N	G	D	Y	K	A	T	V	T	G	G	G	E	G	I	A	T	L	I	P	V	L	N	G	V	H	Q	A	G	L	S	T	T	I	Q	F	T	R	A	E	D	K	I	M	S	G	T	V	S	V	N	G	T
Query Conservation
Alig confidence													.	.	.	.	.	.																																																			.	.
Template Conservation													.	.	.	.	.	.																																																			.	.
Template Sequence		M	Q	G	L	S	F	T	Q	N	G	V	.	.	.	.	.	.	P	V	S	I	S	P	I	T	E	Q	P	D	S	Y	T	A	T	V	V	G	N	S	V	G	D	V	T	I	T	P	Q	V	D	T	L	I	L	S	T	L	Q	K	K	I	S	L	F	P	V	P	.	.	T	L	T	G	I	L	V	N	G	Q	N
Template Known Secondary structure				S								S	.	.	.	.	.	.											S	S									S	S											T	T				G	G	G											.	.								T	T
Template Predicted Secondary structure													.	.	.	.	.	.																																																			.	.
Template SS confidence
		736	.	.	.	740	.	.	.	.	.	.							.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.			.	.	.	800	.	.	.	.	.	.	.
		2176	.	.	.	2180	.	.	.	.	.	.	.	.	.	2190	.	.	.	.	.	.	.	.	.	2200	.	.	.	.	.	.	.	.	.	2210	.	.	.	.	.	.		.	.	.	2220	.	.	.	.	.	.	.	.	.	2230	.	.	.	.	.	.	.	.	.	2240	.	.	.	.	.	.		.	.	.	2250	.	.	.
Predicted Secondary structure																																											.																															.
Query SS confidence																																											.																															.
Query Sequence		D	L	P	T	T	T	F	P	S	Q	G	F	T	G	A	Y	Y	Q	L	N	N	D	N	F	A	P	G	K	T	A	A	D	Y	E	F	S	S	S	A	S	W	.	V	D	V	D	A	T	G	K	V	T	F	K	N	V	G	S	N	S	E	R	I	T	A	T	P	K	S	G	G	P	.	S	Y	V	Y	E	I	R
Query Conservation																																											.																															.
Alig confidence																															.	.											.																															.
Template Conservation																															.	.
Template Sequence		F	A	T	D	K	G	F	P	K	T	I	F	K	N	A	T	F	Q	L	Q	M	D	N	D	V	A	N	N	T	.	.	Q	Y	E	W	S	S	S	F	T	P	N	V	S	V	N	D	Q	G	Q	V	T	I	T	Y	Q	T	Y	S	E	V	A	V	T	A	K	S	K	K	F	P	S	Y	S	V	S	Y	R	F	Y
Template Known Secondary structure				T	T	S				S				T	T								T	T		G	G	G	G	G	.	.	G						S	S	T	T	T					T	T							S			S	S									S	S	S	T	T
Template Predicted Secondary structure																															.	.
Template SS confidence
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.			.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.
		2254	.	.	.	.	.	2260	.	.	.	.	.	.	.	.	.	2270	.	.	.	.	.	.	.	.	.	2280	.	.	.	.	.	.	.	.	.	2290	.	.		.	.	.	.	.	.	.	2300	.	.	.	.	.	.	.	.	.	2310	.	.	.	.	.	.	.	.	.	2320	.	.	.	.	.	.	.	.	.	2330	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		V	K	S	W	W	V	N	A	G	E	A	F	M	I	Y	S	L	A	E	N	F	C	S	S	N	G	Y	T	L	P	R	A	N	Y	L	N	H	C	S	.	S	R	G	I	G	S	L	Y	S	E	W	G	D	M	G	H	Y	T	T	D	A	G	F	Q	S	N	M	Y	W	S	S	S	P	A	N	S	S	E	Q	Y
Query Conservation																																									.
Alig confidence																																									.																		.	.																	.	.
Template Conservation																																																											.	.																	.	.
Template Sequence		P	N	R	W	I	Y	D	G	G	R	S	L	V	S	S	L	E	A	S	R	Q	C	Q	G	S	D	M	S	A	V	L	E	S	S	R	A	T	N	G	T	R	A	P	D	G	T	L	W	G	E	W	G	S	L	T	A	Y	.	.	S	S	D	W	Q	S	G	E	Y	W	V	K	K	T	S	T	.	.	D	F	E
Template Known Secondary structure									S		S	S		B									T		S	S	T	T					B							S	S		S	S	S	S									G	G	G	T	.	.		T	T			S	S						S	S	S	S	.	.
Template Predicted Secondary structure																																																											.	.																	.	.
Template SS confidence
		886	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.			.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.			.	960	.
		2333	.	.	.	.	.	.	2340
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	S	L	A	T	G	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	M	N	M	D	T	G	A
Template Known Secondary structure					T	T	T
Template Predicted Secondary structure
Template SS confidence
		962	.	.	.	.	.	.	.