Job Description P25772 Confidence 100.00% Date Thu Jan 5 11:42:38 GMT 2012 Rank 5 Aligned Residues 281 % Identity 25% Template d1b04a_ SCOP info ATP-grasp DNA ligase/mRNA capping enzyme, catalytic domain Adenylation domain of NAD+-dependent DNA ligase Resolution 2.80

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.	.														.	.
Query SS confidence																																																					.	.	.	.	.	.														.	.
Query Sequence		S	P	A	R	A	Q	E	E	I	S	R	L	Q	Q	Q	I	K	Q	W	D	D	D	Y	W	K	E	G	K	S	E	V	E	D	G	V	Y	D	Q	L	S	A	R	L	T	Q	W	Q	R	C	F	G	.	.	.	.	.	.	S	E	P	R	D	V	M	M	P	P	L	N	G	.	.	A	V	M	H	P	V	A	H
Query Conservation																																																					.	.	.	.	.	.														.	.
Alig confidence																																																					.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		D	R	Q	Q	A	E	R	R	A	A	E	L	R	E	L	L	N	R	Y	G	Y	E	Y	Y	V	L	D	R	P	S	V	P	D	A	E	Y	D	R	L	M	Q	E	L	I	A	I	E	E	Q	Y	P	E	L	K	T	S	D	S	P	T	Q	R	I	G	G	P	P	L	E	A	F	R	K	V	A	H	R	V	P	M
Template Known Secondary structure																										T	T		S			S	S																			G	G	G			T	T		G	G	G	G	T						S								S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure																			.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.
Query Sequence		T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	.	.	.	.	.	.	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P
Query Conservation																			.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	L	A	N	A	F	G	E	G	D	L	R	D	F	D	R	R	V	R	Q	E	V	G	E	A	A	Y	V	C	E	L	A	I	D	G	L	A	V	S	V	R	Y	E	D	G	Y	F	V	Q	G	A	T	R	G	D	G	T	T	G	E	D	I	T	E	N	L	K	T	I	R	S	L	P	L	R	L	K	E	P
Template Known Secondary structure									S	T	T														S	S										S	S									T	T									T	T	S	S				B							T		T	T	S		S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.							.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																							.	.	.	.	.	.																								.													.	.	.	.
Query SS confidence																							.	.	.	.	.	.																								.													.	.	.	.
Query Sequence		L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	.	.	.	.	.	.	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A
Query Conservation																							.	.	.	.	.	.																								.													.	.	.	.
Alig confidence		.																					.	.	.	.	.	.																								.													.	.	.	.
Template Conservation		.
Template Sequence		.	V	S	L	E	A	R	G	E	A	F	M	P	K	A	S	F	L	R	L	N	E	E	R	K	A	R	E	L	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	K	V	A	A	S	R	Q	L	D	L	F	V	Y	G	L	A	D	A	E	A	L	G	I	A	S	H	S	E	A	L	D	Y	L	Q
Template Known Secondary structure		.																														S												S	S								T										T	T	T	T	T	T	T			B
Template Predicted Secondary structure		.
Template SS confidence
			162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																							.	.
Query SS confidence																													.	.																							.	.
Query Sequence		T	A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	.	.	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	.	.	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V
Query Conservation																													.	.																							.	.
Alig confidence										.																			.	.																							.	.
Template Conservation										.
Template Sequence		A	L	G	F	K	V	N	P	.	E	R	R	R	C	A	N	I	D	E	V	I	A	F	V	S	E	W	H	D	K	R	P	Q	L	P	Y	E	I	D	G	I	V	I	K	V	D	S	F	A	Q	Q	R	A	L	G	A	T	A	K	S	P	R	W	A	I	A	Y	K	F	P	A	E
Template Known Secondary structure			T	T					T	.	T					S	S															S	T	T		S	S											B											S	S	S		T	T
Template Predicted Secondary structure										.
Template SS confidence
		243	.	.	.	.	.	.	250		.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions