Job Description P25772 Confidence 21.79% Date Thu Jan 5 11:42:38 GMT 2012 Rank 220 Aligned Residues 93 % Identity 15% Template c4a1cA_ PDB info PDB header:ribosome Chain: A: PDB Molecule:rpl8; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Resolution 3.52 Å

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		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.														.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	K	Y	Q	P	V	A	Q	V	A	E	V	K	A	I	Q	F	A	V	G	K	S	G	K	I	S	V	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	S	L	A	P	V	M	L	D	D	K	K	V	Q	R	V	N	I	G	S	V	R	R	W	Q	E	W	D	I	A	P	G	D	Q	I	L	V	S	L
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	E	R	Q	G	Y	I	R	G	C	I	R	D	I	V	H	E	P	G	R	G	A	P	L	A	E	V	A	F	R	D	P	Y	R	Y	K	T	N	K	E	H	F	I	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	Q	Y	S	G	Q	Y	V	Y	C	G	L
Template Known Secondary structure							S													T	T		S	S										T	T	S	S										B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T			T	T							S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80																						.	.	.	.	.	.	.	.	.	90	.	.	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	Q	G	I	P	R	I	D	D	V	V	W	R	G	A	E	R	T	K	P	T	P	P	E	N	R	F	N	S	L	T	C	Y	F	A	S	D	V	C	Q	E	Q	F	I	S	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	Q	I	A	V	G	N	V	L	P	I	N	R	I	P	E	G	T	V	V	C	N	V	E	E	K	V	G	D	R	G	T	F	S	R	A	S	G	C	Y	A	T	I	I	G	H
Template Known Secondary structure		S					T	T					G	G	G	S		T	T					S	B		S	S	T	T		S			B			S	T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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