Job Description P25772 Confidence 100.00% Date Thu Jan 5 11:42:38 GMT 2012 Rank 4 Aligned Residues 278 % Identity 25% Template c3pn1A_ PDB info PDB header:ligase/ligase inhibitor Chain: A: PDB Molecule:dna ligase; PDBTitle: novel bacterial nad+-dependent dna ligase inhibitors with broad2 spectrum potency and antibacterial efficacy in vivo Resolution 2.00 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																		.	.	.	.	.	.														.	.
Query SS confidence																																																		.	.	.	.	.	.														.	.
Query Sequence		R	A	Q	E	E	I	S	R	L	Q	Q	Q	I	K	Q	W	D	D	D	Y	W	K	E	G	K	S	E	V	E	D	G	V	Y	D	Q	L	S	A	R	L	T	Q	W	Q	R	C	F	G	.	.	.	.	.	.	S	E	P	R	D	V	M	M	P	P	L	N	G	.	.	A	V	M	H	P	V	A	H	T	G	V
Query Conservation																																																		.	.	.	.	.	.														.	.
Alig confidence																																																		.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		N	I	Q	T	Q	L	D	N	L	R	K	T	L	R	Q	Y	E	Y	E	Y	H	V	L	D	N	P	S	V	P	D	S	E	Y	D	R	L	F	H	Q	L	K	A	L	E	L	E	H	P	E	F	L	T	S	D	S	P	T	Q	R	V	G	A	K	P	L	S	G	F	S	Q	I	R	H	E	I	P	M	L	S	L
Template Known Secondary structure																							T	T	S			S	S																			S	G	G	G			T	T	S	G	G	G		S		S	S			S								S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.											.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.																																																								.
Query SS confidence																.	.	.	.	.	.	.	.	.	.																																																								.
Query Sequence		R	K	M	V	D	K	N	A	L	S	L	W	M	R	.	.	.	.	.	.	.	.	.	.	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	.
Query Conservation																.	.	.	.	.	.	.	.	.	.																																																								.
Alig confidence																.	.	.	.	.	.	.	.	.	.																																																								.
Template Conservation
Template Sequence		D	N	A	F	S	D	A	E	F	N	A	F	V	K	R	I	E	D	R	L	I	L	L	P	K	P	L	T	F	C	C	E	P	K	L	D	G	L	A	V	S	I	L	Y	V	N	G	E	L	T	Q	A	A	T	R	G	D	G	T	T	G	E	D	I	T	A	N	I	R	T	I	R	N	V	P	L	Q	L	L	T
Template Known Secondary structure						S																S	S			S	S											S									T	T									T	T	S	S				B							T		T	T	S		S	B		S	S
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.									.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.																									.	.	.	.	.	.	.	.																							.											.	.	.	.	.
Query SS confidence		.																									.	.	.	.	.	.	.	.																							.											.	.	.	.	.
Query Sequence		.	G	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	.	.	.	.	.	.	.	.	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	.	.	.	.	.	P	D	G	P	Q	L	M	S	D
Query Conservation		.																									.	.	.	.	.	.	.	.																							.											.	.	.	.	.
Alig confidence		.																									.	.	.	.	.	.	.	.																							.											.	.	.	.	.
Template Conservation
Template Sequence		D	N	P	P	A	R	L	E	V	R	G	E	V	F	M	P	H	A	G	F	E	R	L	N	K	Y	A	L	E	H	N	E	K	T	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	N	I	T	S	K	R	P	L	V	L	N	A	Y	G	I	G	I	A	E	G	V	D	L	P	T	T	H	Y	A
Template Known Secondary structure		S	S			S																								T	T	T					S	S										T		S						T	T	S														S	S				S	B
Template Predicted Secondary structure
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.																							.	.
Query SS confidence																																			.	.																							.	.
Query Sequence		R	L	K	E	L	A	T	A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	.	.	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	.	.	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P
Query Conservation																																			.	.																							.	.
Alig confidence																.																			.	.																							.	.
Template Conservation																.
Template Sequence		R	L	Q	W	L	K	S	I	G	I	P	V	N	P	.	E	I	R	L	C	N	G	A	D	E	V	L	G	F	Y	R	D	I	Q	N	K	R	S	S	L	G	Y	D	I	D	G	T	V	L	K	I	N	D	I	A	L	Q	N	E	L	G	F	I	S	K	A	P	R	W	A	I	A	Y	K	F	P	A
Template Known Secondary structure									T	T			B		T	.	T																					G	G	G	S	S	S										S	B											T	T			S	S
Template Predicted Secondary structure																.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions