Job Description P25772 Confidence 98.77% Date Thu Jan 5 11:42:38 GMT 2012 Rank 19 Aligned Residues 252 % Identity 13% Template c3l2pA_ PDB info PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase 3; PDBTitle: human dna ligase iii recognizes dna ends by dynamic switching between2 two dna bound states Resolution 3.00 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																																																																	.
Query SS confidence																																																																	.
Query Sequence		A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	.	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N
Query Conservation																																																																	.
Alig confidence						.																.	.																						.							.	.	.	.										.
Template Conservation						.																.	.																						.							.	.	.	.
Template Sequence		P	M	L	A	.	E	A	C	K	S	V	E	Y	A	M	K	K	C	P	N	.	.	G	M	F	S	E	I	K	Y	D	G	E	R	V	Q	V	H	K	N	G	D	H	.	F	S	Y	F	S	R	.	.	.	.	S	L	K	P	V	L	P	H	K	V	A	H	F	K	D	Y	I	P	Q	A	F	P	G	G	H	S
Template Known Secondary structure						.														T	T	.	.										S									T	T		.						T	.	.	.	.	T	S		B			G	G	G	T	T	T	G	G	G	T					S	T	T		S
Template Predicted Secondary structure						.																.	.																						.							.	.	.	.
Template SS confidence
		396	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.			.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.		.	.	.	.	440	.					.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																											.													.	.	.	.	.	.
Query SS confidence																																											.													.	.	.	.	.	.
Query Sequence		S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	G	F	T	L	T
Query Conservation																																											.													.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																				.													.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		M	I	L	D	S	E	V	L	L	I	D	N	K	.	.	.	.	.	.	.	.	.	T	G	K	P	L	P	F	G	T	L	G	V	H	K	K	A	A	F	Q	D	A	N	V	C	L	F	V	F	D	C	I	Y	F	N	D	V	S	L	M	D	R	P	L	C	E	R	R	K	F	L	H	D	N	M	V	E	I	P
Template Known Secondary structure											B		T	T	.	.	.	.	.	.	.	.	.	T			B			G	G	G	G	S								S	S														T	T				T	T	S																B	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		468	.	470	.	.	.	.	.	.	.	.	.	480										.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.
		248	.	250	.					.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.
Predicted Secondary structure						.	.	.	.																																																										.	.	.	.	.	.
Query SS confidence						.	.	.	.																																																										.	.	.	.	.	.
Query Sequence		Q	T	Y	T	.	.	.	.	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V	.	.	.	.	.	.	A	Q	V	A	E	V	K	A	I
Query Conservation						.	.	.	.																																																										.	.	.	.	.	.
Alig confidence						.	.	.	.																					.	.	.	.																				.	.	.	.		.	.	.							.	.	.	.	.	.
Template Conservation																														.	.	.	.																				.	.	.	.		.	.	.
Template Sequence		N	R	I	M	F	S	E	M	K	R	V	T	K	A	L	D	L	A	D	M	I	T	R	V	I	Q	E	G	.	.	.	.	L	E	G	L	V	L	K	D	V	K	G	T	Y	E	P	G	K	R	H	.	.	.	.	W	.	.	.	L	K	V	K	K	D	Y	L	N	M	A	D	T	A	D	L	V	V	L	G	A
Template Known Secondary structure		T	T											S														T	T	.	.	.	.									S	S					T	T				.	.	.	.		.	.	.					T	T	T
Template Predicted Secondary structure																														.	.	.	.																				.	.	.	.		.	.	.
Template SS confidence
		539	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.					.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.					.				.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
		318	.	320	.	.		.	.	.	.	.	.	.			330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.		.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.							.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure							.								.	.																		.																			.	.	.	.	.	.
Query SS confidence							.								.	.																		.																			.	.	.	.	.	.
Query Sequence		Q	F	A	V	G	.	K	S	G	K	I	S	V	.	.	V	A	S	L	A	P	V	M	L	D	D	K	K	V	Q	R	V	.	N	I	G	S	V	R	R	W	Q	E	W	D	I	A	P	G	D	Q	.	.	.	.	.	.	I	L	V	S	L	A	G	Q	G	I	P
Query Conservation							.								.	.																		.																			.	.	.	.	.	.
Alig confidence							.								.	.																		.																			.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	G	Q	G	S	K	G	G	M	M	S	I	F	L	M	G	C	Y	D	P	G	S	Q	K	W	C	T	V	T	K	C	A	G	G	H	D	D	A	T	L	A	R	L	Q	N	E	L	D	M	V	K	I	S	K	A	A	V	W	E	I	T	G	A	E	F	S	K
Template Known Secondary structure						T	T	S		S	S											T	T	T	S	S									T	T									T	T	T	S	S																S
Template Predicted Secondary structure
Template SS confidence
		611	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions