Job Description P25772 Confidence 97.09% Date Thu Jan 5 11:42:38 GMT 2012 Rank 42 Aligned Residues 191 % Identity 19% Template c3kyhC_ PDB info PDB header:protein binding Chain: C: PDB Molecule:mrna-capping enzyme subunit alpha; PDBTitle: saccharomyces cerevisiae cet1-ceg1 capping apparatus Resolution 3.00 Å

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		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.												.	.	.
Query SS confidence																																				.	.	.	.	.												.	.	.
Query Sequence		V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	.	.	.	.	.	K	L	N	K	A	I	S	R	G	N	G	.	.	.	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N	S
Query Conservation																																				.	.	.	.	.												.	.	.
Alig confidence															.																					.	.	.	.	.												.	.	.											.	.
Template Conservation															.																																																		.	.
Template Sequence		F	Q	H	S	D	V	E	E	K	L	L	A	H	.	D	Y	Y	V	C	E	K	T	D	G	L	R	V	L	M	F	I	V	I	N	P	V	T	G	E	Q	G	C	F	M	I	D	R	E	N	N	Y	Y	L	V	N	G	F	R	F	P	R	L	P	.	.	Q	K	K	K	E	E	L	L	E	T	L	Q	D	G	T
Template Known Secondary structure										T	T	S	S	S	.										S											T	T	T										S	S	S														S	.	.	S			S	S	G	G	G	T					S
Template Predicted Secondary structure															.																																																		.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.			.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.																	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.																	.	.	.	.	.	.
Query Sequence		T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	N	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	G	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.																	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	L	D	G	E	L	V	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	T	N	P	M	T	K	L	Q	E	L	R	Y	L	M	F	D	C	L	A	I	N	G	R	C	L	T	Q	S	P	T	S	S	R	L	A	H	L	G	K	E	F	F	K	P	Y	F	D
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T	T																T	T				S	S	S	B											T	T
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.																									.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
															244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V	A	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.																										.	.	.	.	.
Template Conservation																																					.	.	.	.	.																										.	.	.	.	.
Template Sequence		L	R	A	A	Y	P	N	R	C	T	T	F	P	F	K	I	S	M	K	H	M	D	F	S	Y	Q	L	V	K	V	A	K	S	L	D	.	.	.	.	.	K	L	P	H	L	S	D	G	L	I	F	T	P	V	K	A	P	Y	T	A	G	G	K	D	S	.	.	.	.	.	L	L	L	K	W	K	P	E	Q	E
Template Known Secondary structure							S	T	T		S				S										G	G	G									T	.	.	.	.	.	T		S	S										S	S	S	B			S	S	S				.	.	.	.	.								T	T	T
Template Predicted Secondary structure																																					.	.	.	.	.																										.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.						.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.						.	.	.	.	.	.	250	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	E	V	K	A	I	Q	F	A	V	G	K	S	G	K	I	S	V	V	A	S	L
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		N	T	V	.	.	D	F	K	L	I	L	D	I	P	Y	D	V	K	P	V	F	S	L
Template Known Secondary structure					.	.												S
Template Predicted Secondary structure					.	.
Template SS confidence
		254	.	.			.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions