Job Description P25772 Confidence 100.00% Date Thu Jan 5 11:42:38 GMT 2012 Rank 7 Aligned Residues 276 % Identity 26% Template c3jslA_ PDB info PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: crystal structure of the adenylation domain of nad+-2 dependent dna ligase from staphylococcus aureus Resolution 1.80 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.	100
Predicted Secondary structure																																																		.	.	.	.	.	.														.	.
Query SS confidence																																																		.	.	.	.	.	.														.	.
Query Sequence		R	A	Q	E	E	I	S	R	L	Q	Q	Q	I	K	Q	W	D	D	D	Y	W	K	E	G	K	S	E	V	E	D	G	V	Y	D	Q	L	S	A	R	L	T	Q	W	Q	R	C	F	G	.	.	.	.	.	.	S	E	P	R	D	V	M	M	P	P	L	N	G	.	.	A	V	M	H	P	V	A	H	T	G	V
Query Conservation																																																		.	.	.	.	.	.														.	.
Alig confidence																																																		.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		D	L	S	S	R	V	N	E	L	H	D	L	L	N	Q	Y	S	Y	E	Y	Y	V	E	D	N	P	S	V	P	D	S	E	Y	D	K	L	L	H	E	L	I	K	I	E	E	E	H	P	E	Y	K	T	V	D	S	P	T	V	R	V	G	G	E	A	Q	A	S	F	N	K	V	N	H	D	T	P	M	L	S	L
Template Known Secondary structure																							T	S				S	S																				G	G	G			T	T		G	G	G	G	G			S											S	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.							.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.
Query Sequence		R	K	M	V	D	K	N	A	L	S	L	W	M	R	.	.	.	.	.	.	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N
Query Conservation																.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.																																																										.
Template Conservation																																																																															.
Template Sequence		G	N	A	F	N	E	D	D	L	R	K	F	D	Q	R	I	R	E	Q	I	G	N	V	E	Y	M	C	E	L	K	I	D	G	L	A	V	S	L	K	Y	V	D	G	Y	F	V	Q	G	L	T	R	G	D	G	T	T	G	E	D	I	T	E	N	L	K	T	I	H	A	I	P	L	K	M	K	E	P	.	L	N
Template Known Secondary structure						S															T		S											S									T	T									T	T	S	S				B						T	T		T	T	S		S	B		S	S		.
Template Predicted Secondary structure																																																																															.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.		160	.
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.									.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.																						.													.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.																						.													.	.	.	.
Query Sequence		S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	.	.	.	.	.	.	.	.	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A	T
Query Conservation																						.	.	.	.	.	.	.	.																						.													.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.																						.													.	.	.	.
Template Conservation
Template Sequence		V	E	V	R	G	E	A	Y	M	P	R	R	S	F	L	R	L	N	E	E	K	E	K	N	D	E	Q	L	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	S	K	L	T	A	K	R	K	L	S	V	F	I	Y	S	V	N	D	F	T	D	F	N	A	R	S	Q	S	E	A	L	D	E	L	D	K
Template Known Secondary structure																							B	T	T	B					S	S										S		S								S										S			T	T				S	B
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure																												.	.																							.	.
Query SS confidence																												.	.																							.	.
Query Sequence		A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	.	.	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	.	.	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q
Query Conservation																												.	.																							.	.
Alig confidence									.																			.	.																							.	.
Template Conservation									.
Template Sequence		L	G	F	T	T	N	K	.	N	R	A	R	V	N	N	I	D	G	V	L	E	Y	I	E	K	W	T	S	Q	R	E	S	L	P	Y	D	I	D	G	I	V	I	K	V	N	D	L	D	Q	Q	D	E	M	G	F	T	Q	K	S	P	R	W	A	I	A	Y	K	F	P
Template Known Secondary structure			T					T	.	T					S	S															G	G	G	S	S	S										S	B									B		S	S	S	B	T	T
Template Predicted Secondary structure									.
Template SS confidence
		242	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions