Job Description P25772 Confidence 98.86% Date Thu Jan 5 11:42:38 GMT 2012 Rank 17 Aligned Residues 214 % Identity 20% Template c3gdeA_ PDB info PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: the closed conformation of atp-dependent dna ligase from2 archaeoglobus fulgidus Resolution 2.30 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N	S
Query Conservation
Alig confidence						.															.	.	.																						.							.	.	.	.																							.	.
Template Conservation						.															.	.	.																						.							.	.	.	.																							.	.
Template Sequence		M	M	L	A	.	Q	V	A	E	S	L	E	S	A	V	R	E	M	R	.	.	.	T	A	A	V	E	W	K	F	D	G	S	R	V	Q	V	H	W	D	G	S	R	.	V	T	I	Y	S	R	.	.	.	.	R	L	E	N	V	T	N	A	L	P	D	I	V	E	E	I	K	K	S	V	K	P	.	.	G	V
Template Known Secondary structure						.				S									S	S	.	.	.	S								S	S									S	S		.						T	.	.	.	.	T			B		G	G	G												B		S	.	.	S
Template Predicted Secondary structure						.															.	.	.																						.							.	.	.	.																							.	.
Template SS confidence
		225	.	.	.		.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.						.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.												.	.	.	.	.
Query SS confidence																																										.												.	.	.	.	.
Query Sequence		T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	P	.	.	.	.	.	D	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	G	F	T	L	T	Q	T
Query Conservation																																										.												.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.																										.												.	.	.	.	.																	.
Template Conservation										.	.	.	.	.	.	.																																																											.
Template Sequence		I	L	D	G	E	V	I	A	.	.	.	.	.	.	.	V	K	E	G	K	P	M	P	F	Q	H	V	L	R	R	F	R	R	D	V	A	K	M	V	E	K	I	P	L	E	A	H	F	F	D	I	L	Y	H	D	G	E	C	I	D	L	P	L	R	E	R	R	K	L	L	E	S	A	.	V	N	E	S	E	K
Template Known Secondary structure										.	.	.	.	.	.	.			T	T																T							S													S	S	B		T	T	S	B												.	B				S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.																																																											.
Template SS confidence
		294	.	.	.	.	.	300	.								.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.
						250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.		.	.
Predicted Secondary structure		.	.	.	.																																																																										.
Query SS confidence		.	.	.	.																																																																										.
Query Sequence		.	.	.	.	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V	A	Q	V	A	E	V	K	A	I	Q	F	A	V	G	.	K	S
Query Conservation		.	.	.	.																																																																										.
Alig confidence		.	.	.	.																							.	.	.	.																	.	.							.																							.
Template Conservation																												.	.	.	.																	.	.							.
Template Sequence		I	K	L	A	K	Q	I	V	T	D	S	V	D	E	V	R	K	M	Y	D	E	A	I	S	A	G	.	.	.	.	H	E	G	V	M	I	K	L	P	S	S	P	Y	I	P	G	.	.	K	R	G	K	N	W	.	L	K	V	K	A	I	M	E	T	L	D	L	V	V	V	G	G	E	W	G	E	G	K	R	S
Template Known Secondary structure											S															T	T	.	.	.	.									T	T		B			T	T	.	.							.					S	S																T	T	G	G
Template Predicted Secondary structure																												.	.	.	.																	.	.							.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.					.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.			410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		325	.	.	.	.			330	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		G	K	I	S	V	.	.	V	A	S	L	A	P
Query Conservation							.	.
Alig confidence							.	.
Template Conservation
Template Sequence		H	W	L	S	S	F	E	L	A	C	L	D	P
Template Known Secondary structure		G	S											T
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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