Job Description P25772 Confidence 100.00% Date Thu Jan 5 11:42:38 GMT 2012 Rank 11 Aligned Residues 223 % Identity 24% Template c3bacA_ PDB info PDB header:ligase Chain: A: PDB Molecule:dna ligase; PDBTitle: structural basis for the inhibition of bacterial nad+2 dependent dna ligase Resolution 3.00 Å

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		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.											.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	V	M	H	P	V	A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	.	.	.	.	.	.	.	.	.	.	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V
Query Conservation																												.	.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Q	I	R	H	E	I	P	M	L	S	L	D	N	A	F	S	D	A	E	F	N	A	F	V	K	R	I	E	D	R	L	I	L	L	P	K	P	L	T	F	C	C	E	P	K	L	D	G	L	A	V	S	I	L	Y	V	N	G	E	L	T	Q	A	A	T	R	G	D	G	T	T	G	E	D	I	T	A	N	I
Template Known Secondary structure							S	S										S															S	S	S			S	S										S	S									T	T									T	T	S	S				B
Template Predicted Secondary structure
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		159	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.									.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure														.	.																							.	.	.	.	.	.	.	.																								.											.	.
Query SS confidence														.	.																							.	.	.	.	.	.	.	.																								.											.	.
Query Sequence		S	L	I	S	A	V	P	Q	T	V	S	G	.	.	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	.	.	.	.	.	.	.	.	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	.	.
Query Conservation														.	.																							.	.	.	.	.	.	.	.																								.											.	.
Alig confidence														.	.																							.	.	.	.	.	.	.	.																								.											.	.
Template Conservation
Template Sequence		R	T	I	R	N	V	P	L	Q	L	L	T	D	N	P	P	A	R	L	E	V	R	G	E	V	F	M	P	H	A	G	F	E	R	L	N	K	Y	A	L	E	H	N	E	K	T	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	N	I	T	S	K	R	P	L	V	L	N	A	Y	G	I	G	I
Template Known Secondary structure			T		T	T	S		S	B			S	S	S			S																									T	T					S	S										S		S	S							S
Template Predicted Secondary structure
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
					226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																											.	.																							.	.
Query SS confidence		.	.	.																																											.	.																							.	.
Query Sequence		.	.	.	P	D	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	.	.	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	.	.	R	H	W	L	P	G	Q	A	E
Query Conservation		.	.	.																																											.	.																							.	.
Alig confidence		.	.	.																								.																			.	.																							.	.
Template Conservation																												.
Template Sequence		A	E	G	V	G	L	P	T	T	H	Y	A	R	L	Q	W	L	K	S	I	G	I	P	V	N	P	.	E	I	R	L	C	N	G	A	D	E	V	L	D	F	Y	Q	D	I	Q	N	K	R	S	S	L	G	Y	D	I	D	G	T	V	L	K	I	N	D	I	A	L	Q	N	E	L	G	F	I	S	K	A	P	R
Template Known Secondary structure				S					S	B											T	T			B		T	.	T																			T	T	T	T	T	T	S	S										S	B													S		S
Template Predicted Secondary structure																												.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	V	A	W	K	Y	Q	P	V	A	Q	V	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	A	I	A	Y	K	F	P	A	Q	E	E	L	T
Template Known Secondary structure		S
Template Predicted Secondary structure
Template SS confidence
		310	.	.	.	.	.	.	.	.	.	320	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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