Job Description P25772 Confidence 98.78% Date Thu Jan 5 11:42:38 GMT 2012 Rank 18 Aligned Residues 142 % Identity 23% Template c2vugB_ PDB info PDB header:ligase Chain: B: PDB Molecule:pab1020; PDBTitle: the structure of an archaeal homodimeric rna ligase Resolution 2.9 Å

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		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G
Query Conservation
Alig confidence																										.								.															.	.
Template Conservation																										.								.															.	.
Template Sequence		K	R	G	E	F	Y	V	E	E	K	V	D	G	Y	N	V	R	V	V	M	Y	K	G	K	.	M	L	G	I	T	R	G	.	G	F	I	C	P	F	T	T	E	R	I	P	D	F	.	.	V	P	Q	E	F	F	K	D	N	P	N	L	I	L	V	G	E	M	A	G	P	E	S	P	Y	L	V	E	G	P	P
Template Known Secondary structure		S	S											S									T	T		.						T	T	.	S		B								G	G	G	T	.	.	S		T							T	T									S	S	S		S	S		S				T
Template Predicted Secondary structure																										.								.															.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130			.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.					.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.																			.
Query SS confidence																																							.	.	.	.																			.
Query Sequence		G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	N	S	L	G	V	F	V	W	A	W	P	D	G	P	Q	L	.	.	.	.	M	S	D	R	L	K	E	L	A	T	A	G	F	T	L	T	Q	T	.	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K
Query Conservation																																							.	.	.	.																			.
Alig confidence						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																			.
Template Conservation						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Y	V	K	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	Q	F	F	L	F	D	V	Q	E	I	K	T	G	R	S	L	P	V	E	E	R	L	K	I	A	E	E	Y	G	I	N	H	V	E	V	F	G	K	Y	T	K	D	D	V	D	E	L	Y	Q	L	I	E	R	L	S	K
Template Known Secondary structure		T			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											T	T	T			B														T			B									G	G	G
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.																			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	P	F	V	T	D	G	V	V	V	R
Query Conservation
Alig confidence				.	.	.	.
Template Conservation				.	.	.	.
Template Sequence		E	G	.	.	.	.	R	E	G	I	I	M	K
Template Known Secondary structure		T	T	.	.	.	.
Template Predicted Secondary structure				.	.	.	.
Template SS confidence
		224	.					.	.	.	.	230	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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