 |
Job Description | P25772 | Confidence | 90.21% | Date | Thu Jan 5 11:42:38 GMT 2012 |
Rank | 75 | Aligned Residues | 70 |
% Identity | 11% | Template | c2p6uA_ |
PDB info |
PDB header:dna binding protein | Chain: A: PDB Molecule:afuhel308 helicase; |
PDBTitle: apo structure of the hel308 superfamily 2 helicase
|
Resolution | 3.14 Å |
|
 |
  |   |
406 | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | |
|
|
. | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
| . | . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | D | V | C | Q | E | Q | F | I | S | R | L | V | W | L | G | A | K | Q | V | L | G | . |
. |
. |
L | D | G | I | G | E | A | G | W | R | A | L | H | Q | T | H | R | F | E | H | I | F | S | W | L | L | L | T | P | E | Q | L | Q | N | T | P | G | I | A | K | S | K | S | A | Q | L | W | H | Q | F | N | L |
Query Conservation |   |
|   |   |
|
|
|
|   |   |   |
|
|   |
|
|   |
|
|   |
|
|
| . | . | . |
|   |
|
|
|   |   |   |
|   |   |
|   |   |   |
|   |
|   |   |   |   |
|
|   |   |
|   |   |
|   |
|   |   |
|   |
|
|
|   |
|
|
|   |
|
|   |   |   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |
|   |   |   |
| . |   |   |
|   |   |   |
|   |   | . |   |   |   |   |   |   |   |   | . | . |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |
Template Sequence |   |
G | N | T | S | V | S | G | L | T | E | R | I | K | H | G | V | K | E | E | L | L | E | L | V | R | I | R | H | I | G | R | V | R | A | R | K | L | Y | N | A | G | . |
I | R | N | A | E | D | I | V | R | . |
H | R | E | K | V | A | S | L | . |
. |
I | G | R | G | I | A | E | R | V | V | E | G | I | S | V |
Template Known Secondary structure |   |
T |
|
| T | T | T | T |  |  |  |  |  |  |  | T |
|
| S | S | S |  |  |  |  | T | S | S |
|
|  |  |  |  |  |  |  |  |  | T | S | S | . |
|
| S |  |  |  |  |  |  | . | T |  |  |  |  |  |  |  | . | . | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
| . |
|
|
|  |  |  |  |  |
| . |
|
|  |  |  |  |  |  | . | . |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
612 | . | . | . | . | . | . | . | 620 | . | . | . | . | . | . | . | . | . | 630 | . | . | . | . | . | . | . | . | . | 640 | . | . | . | . | . | . | . | . | . | 650 | . | . | |
. | . | . | . | . | . | . | 660 | . | |
. | . | . | . | . | . | . | . | |
|
670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|