Job Description P25772 Confidence 100.00% Date Thu Jan 5 11:42:38 GMT 2012 Rank 1 Aligned Residues 532 % Identity 23% Template c2owoA_ PDB info PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate Resolution 2.30 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.							.	.	.	80	.	.	.	.	.	.	.	.	.			90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.														.	.
Query SS confidence																																																			.	.	.	.	.	.														.	.
Query Sequence		A	R	A	Q	E	E	I	S	R	L	Q	Q	Q	I	K	Q	W	D	D	D	Y	W	K	E	G	K	S	E	V	E	D	G	V	Y	D	Q	L	S	A	R	L	T	Q	W	Q	R	C	F	G	.	.	.	.	.	.	S	E	P	R	D	V	M	M	P	P	L	N	G	.	.	A	V	M	H	P	V	A	H	T	G
Query Conservation																																																			.	.	.	.	.	.														.	.
Alig confidence																																																			.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		E	S	I	E	Q	Q	L	T	E	L	R	T	T	L	R	H	H	E	Y	L	Y	H	V	M	D	A	P	E	I	P	D	A	E	Y	D	R	L	M	R	E	L	R	E	L	E	T	K	H	P	E	L	I	T	P	D	S	P	T	Q	R	V	G	A	A	P	L	A	A	F	S	Q	I	R	H	E	V	P	M	L	S
Template Known Secondary structure																									T	T		S	S	B			T																	T	T	S			T	T	S	G	G	G			S					B								S	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.										.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence		V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	E	.	.	.	.	.	.	.	.	.	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	D	N	V	F	D	E	E	S	F	L	A	F	N	K	R	V	Q	D	R	L	K	N	N	E	K	V	T	W	C	C	E	L	K	L	D	G	L	A	V	S	I	L	Y	E	N	G	V	L	V	S	A	A	T	R	G	D	G	T	T	G	E	D	I	T	S	N	V	R	T	I	R	A	I	P	L	K	L	H	G
Template Known Secondary structure							S															S	S	S													S	S									T	T									T	T	S	S				B							T		T	T	S		S	B			S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
				171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.									.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.						.	.	.	.	230	.	.	.	.
Predicted Secondary structure		.	.																									.	.	.	.	.	.	.	.																						.											.	.	.	.	.
Query SS confidence		.	.																									.	.	.	.	.	.	.	.																						.											.	.	.	.	.
Query Sequence		.	.	P	L	A	N	S	T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	.	.	.	.	.	.	.	.	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	T	L	.	N	S	L	G	V	F	V	W	A	W	.	.	.	.	.	P	D	G	P	Q	L	M	S	D
Query Conservation		.	.																									.	.	.	.	.	.	.	.																						.											.	.	.	.	.
Alig confidence		.	.																									.	.	.	.	.	.	.	.																						.											.	.	.	.	.
Template Conservation
Template Sequence		E	N	I	P	A	R	L	E	V	R	G	E	V	F	L	P	Q	A	G	F	E	K	I	N	E	D	A	R	R	T	G	G	K	V	F	A	N	P	R	N	A	A	A	G	S	L	R	Q	L	D	P	R	I	T	A	K	R	P	L	T	F	F	C	Y	G	V	G	V	L	E	G	G	E	L	P	D	T	H	L	G
Template Known Secondary structure		S	S			S																									S	S					S											T		S							T	S														S	S				S	B
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																																			.	.																							.	.
Query SS confidence																																			.	.																							.	.
Query Sequence		R	L	K	E	L	A	T	A	G	F	T	L	T	Q	T	Y	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	.	.	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	.	.	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V	A	Q
Query Conservation																																			.	.																							.	.
Alig confidence																.																			.	.																							.	.
Template Conservation																.
Template Sequence		R	L	L	Q	F	K	K	W	G	L	P	V	S	D	.	R	V	T	L	C	E	S	A	E	E	V	L	A	F	Y	H	K	V	E	E	D	R	P	T	L	G	F	D	I	D	G	V	V	I	K	V	N	S	L	A	Q	Q	E	Q	L	G	F	V	A	R	A	P	R	W	A	V	A	F	K	F	P	A	Q	E	Q
Template Known Secondary structure										T					T	.	T					S	S															G	G	G	S	S	S										S	B									B		S	S	S	B	S	S
Template Predicted Secondary structure																.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.
Query SS confidence																																																																										.	.
Query Sequence		V	A	E	V	K	A	I	Q	F	A	V	G	K	S	G	K	I	S	V	V	A	S	L	A	P	V	M	L	D	D	K	K	V	Q	R	V	N	I	G	S	V	R	R	W	Q	E	W	D	I	A	P	G	D	Q	I	L	V	S	L	A	G	Q	G	I	P	R	I	D	D	V	V	W	.	.	R	G	A	E	R	T
Query Conservation																																																																										.	.
Alig confidence																																																																										.	.
Template Conservation
Template Sequence		M	T	F	V	R	D	V	E	F	Q	V	G	R	T	G	A	I	T	P	V	A	R	L	E	P	V	H	V	A	G	V	L	V	S	N	A	T	L	H	N	A	D	E	I	E	R	L	G	L	R	I	G	D	K	V	V	I	R	R	A	G	D	V	I	P	Q	V	V	N	V	V	L	S	E	R	P	E	D	T	R
Template Known Secondary structure														T	T	S	B													T	T										S								T			B	T									T	T	T									G	G	G			S	S		B
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		389	390	.	.	.	.	.	.	.	.	.											400	.	.	.	.	.	.	.		.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.									.
Query SS confidence													.	.	.	.	.	.	.	.	.	.									.
Query Sequence		K	P	T	P	P	E	N	R	F	N	S	.	.	.	.	.	.	.	.	.	.	L	T	C	Y	F	A	S	D	.	V	C	Q	E	Q	F	I	S	R	L	V	W	L	G	A	K	Q	V	L	G	L	D	G	I	G	E	A	G	W	R	A	L	H	Q	T	H	R	F	E	H	I	F	S	W	L	L	L	T	P	E
Query Conservation													.	.	.	.	.	.	.	.	.	.									.
Alig confidence													.	.	.	.	.	.	.	.	.	.									.
Template Conservation
Template Sequence		E	V	V	F	P	T	H	C	P	V	C	G	S	D	V	E	R	V	E	G	E	A	V	A	R	C	T	G	G	L	I	C	G	A	Q	R	K	E	S	L	K	H	F	V	S	R	R	A	M	D	V	D	G	M	G	D	K	I	I	D	Q	L	V	E	K	E	Y	V	H	T	P	A	D	L	F	K	L	T	A	G
Template Known Secondary structure							S	B		T	T	T			B					T	T		S							G	G	G														S	T	T	T	T			T	T												T	T			S	S	G	G	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		458	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.				.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.
Predicted Secondary structure																																											.	.	.
Query SS confidence																																											.	.	.
Query Sequence		Q	L	Q	N	T	P	G	I	A	K	S	K	S	A	Q	L	W	H	Q	F	N	L	A	R	K	Q	P	F	T	R	W	V	M	A	M	G	I	P	L	T	R	.	.	.	A	A	L	N	A	S	D	E	R	S	W	S	Q	L	L	F	S	T	E	Q	F	W	Q	Q	L	P	G	T	G	S	G	R	A	R	Q	V
Query Conservation																																											.	.	.
Alig confidence																																											.	.	.
Template Conservation
Template Sequence		K	L	T	G	L	E	R	M	G	P	K	S	A	Q	N	V	V	N	A	L	E	K	A	K	E	T	T	F	A	R	F	L	Y	A	L	G	I	R	E	V	G	E	A	T	A	A	G	L	A	A	Y	F	G	T	L	E	A	L	E	A	A	S	I	E	E	L	Q	K	V	P	D	V	G	I	V	V	A	S	H	V
Template Known Secondary structure					T	S	T	T																	T	B										T	T		T	T															S						T							T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		535	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	W	K	E	N	A	Q	I	K	K	L	G	S	W	L	A	A	Q	Q	I	T	G	F	E	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	N	F	F	A	E	E	S	N	R	N	V	I	S	E	L	L	A	E	G	V	H	W	P	A	P
Template Known Secondary structure						T															T		B
Template Predicted Secondary structure
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.