Job Description P25772 Confidence 96.06% Date Thu Jan 5 11:42:38 GMT 2012 Rank 49 Aligned Residues 95 % Identity 16% Template c2csdB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:topoisomerase v; PDBTitle: crystal structure of topoisomerase v (61 kda fragment) Resolution 2.90 Å

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		410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.				.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.				.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure																										.	.	.																					.	.	.
Query SS confidence																										.	.	.																					.	.	.
Query Sequence		Q	E	Q	F	I	S	R	L	V	W	L	G	A	K	Q	V	L	G	L	D	G	I	G	E	.	.	.	A	G	W	R	A	L	H	Q	T	H	R	F	E	H	I	F	S	W	L	L	.	.	.	L	T	P	E	Q	L	Q	N	T	P	G	I	A	K	S	K	S	A	Q	L	W	H	Q	F	N	L	A	R	K	Q
Query Conservation																										.	.	.																					.	.	.
Alig confidence														.	.	.	.	.								.	.	.															.						.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.																									.																														.	.	.	.	.	.	.	.	.
Template Sequence		P	D	A	A	D	E	L	I	E	H	F	E	.	.	.	.	.	S	I	A	G	I	L	A	T	D	L	E	E	I	E	R	M	Y	E	E	G	R	L	S	E	.	E	A	Y	R	A	A	V	E	I	Q	L	A	E	L	T	K	K	E	G	V	G	R	K	T	A	E	R	L	L	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														.	.	.	.	.	S							S											T	T	S	S			.																	S	T	T			S	S							.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.																									.																														.	.	.	.	.	.	.	.	.
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.						.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		P	F	T	R	W	V	M	A	M	G	I	P	L	T	R	A	A	L	N	A	S	D	E	R	S	W	S	Q	L	.	L	F	S	T	E	Q	F	W	Q	Q	L	P	G	T	G	S	G	R	A	R	Q	V	I	E
Query Conservation																															.
Alig confidence		.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.							.
Template Conservation		.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	R	A	F	G	N	P	.	.	.	.	.	.	.	.	.	.	.	E	R	V	K	Q	L	A	R	E	F	E	I	E	K	L	A	S	V	E	G	V	G	E	R	V	L	R	S	L	V	P
Template Known Secondary structure		.	.	.	.	.	.				S	S		.	.	.	.	.	.	.	.	.	.	.										T						T	T	S	T	T								T	T	S	T
Template Predicted Secondary structure		.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
								429	430	.	.	.	.												.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions