Job Description P25772 Confidence 98.59% Date Thu Jan 5 11:42:38 GMT 2012 Rank 21 Aligned Residues 212 % Identity 14% Template c2cfmA_ PDB info PDB header:ligase Chain: A: PDB Molecule:thermostable dna ligase; PDBTitle: atp-dependent dna ligase from pyrococcus furiosus Resolution 1.8 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	T	G	V	R	K	M	V	D	K	N	A	L	S	L	W	M	R	E	R	S	D	L	W	V	Q	P	K	V	D	G	V	A	V	T	L	V	Y	R	D	G	K	L	N	K	A	I	S	R	G	N	G	L	K	G	E	D	W	T	Q	K	V	S	L	I	S	A	V	P	Q	T	V	S	G	P	L	A	N	S
Query Conservation
Alig confidence					.																	.	.																						.							.	.	.	.																							.
Template Conservation					.																	.	.																						.							.	.	.	.																							.
Template Sequence		P	X	L	.	A	Q	Q	A	A	S	I	R	D	A	L	L	E	X	G	G	.	.	E	A	E	F	E	I	K	Y	D	G	A	R	V	Q	V	H	K	D	G	S	K	.	I	I	V	Y	S	R	.	.	.	.	R	L	E	N	V	T	R	A	I	P	E	I	V	E	A	L	K	E	A	I	I	P	.	E	K	A
Template Known Secondary structure					.					S									T	T	S	.	.										S									T	T		.						T	.	.	.	.	T			B		G	G	G												B		S	.	S
Template Predicted Secondary structure					.																	.	.																						.							.	.	.	.																							.
Template SS confidence
		224	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.			.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.		.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.															.	.	.	.	.	.
Query SS confidence																																								.	.	.															.	.	.	.	.	.
Query Sequence		T	L	Q	G	E	I	F	L	Q	R	E	G	H	I	Q	Q	Q	M	G	G	I	N	A	R	A	K	V	A	G	L	M	M	R	Q	D	D	S	D	.	.	.	T	L	N	S	L	G	V	F	V	W	A	W	P	D	.	.	.	.	.	.	G	P	Q	L	M	S	D	R	L	K	E	L	A	T	A	G	F	T	L
Query Conservation																																								.	.	.															.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																							.	.	.															.	.	.	.	.	.																.
Template Conservation												.	.	.	.	.	.																																																													.
Template Sequence		I	V	E	G	E	L	V	A	I	G	.	.	.	.	.	.	E	N	G	R	P	L	P	F	Q	Y	V	L	R	R	F	R	R	K	H	N	I	E	E	X	X	E	K	I	P	L	E	L	N	L	F	D	V	L	Y	V	D	G	Q	S	L	I	D	T	K	F	I	D	R	R	R	T	L	E	E	I	.	I	K	Q
Template Known Secondary structure										B		.	.	.	.	.	.	T	T	S	S	B			T											S									S													T	T				T	T	S													.	B
Template Predicted Secondary structure												.	.	.	.	.	.																																																													.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.							.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.		.	.	.
		247	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure						.	.	.	.
Query SS confidence						.	.	.	.
Query Sequence		T	Q	T	Y	.	.	.	.	T	R	A	V	K	N	A	D	E	V	A	R	V	R	N	E	W	W	K	A	E	L	P	F	V	T	D	G	V	V	V	R	A	A	K	E	P	E	S	R	H	W	L	P	G	Q	A	E	W	L	V	A	W	K	Y	Q	P	V	A	Q	V	A	E	V	K	A	I	Q	F	A	V	G
Query Conservation						.	.	.	.
Alig confidence						.	.	.	.																						.	.	.	.																	.	.							.
Template Conservation																															.	.	.	.																	.	.							.
Template Sequence		N	E	K	I	K	V	A	E	N	L	I	T	K	K	V	E	E	A	E	A	F	Y	K	R	A	L	E	X	G	.	.	.	.	H	E	G	L	X	A	K	R	L	D	A	V	Y	E	P	G	.	.	N	R	G	K	K	W	.	L	K	I	K	P	T	X	E	N	L	D	L	V	I	I	G	A	E	W	G	E	G
Template Known Secondary structure			S	S										S															T	T	.	.	.	.									T	T					T	T	.	.							.					S	S															S	G
Template Predicted Secondary structure																															.	.	.	.																	.	.							.
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.					.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.			.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
			323	.	.	.	.	.	.	330
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	K	S	G	K	I	S	V	V
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		R	R	A	H	L	F	G	S	F
Template Known Secondary structure		G	G	T	T	S
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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